Locus 5074

Sequence ID 2R_DroMel_CAF1
Location 16,476,672 – 16,476,766
Length 94
Max. P 0.500000
window8112

overview

Window 2

Location 16,476,672 – 16,476,766
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.42
Mean single sequence MFE -30.07
Consensus MFE -17.38
Energy contribution -17.21
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.69
Structure conservation index 0.58
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16476672 94 - 20766785
AGGGGAAAAACUAAUUACAUAGAAAAGCUGGAAAAGCGUCUGCC-GGUGGGCGUGUUGGGUUAGAAGGGCCACG--CCCACGCCAUUCCAUCA---GCUC-
...((((............((((...(((.....))).))))..-.((((((((....((((.....)))))))--)))))....))))....---....- ( -28.00)
>DroPse_CAF1 185852 99 - 1
AGGGGAAAAACUAAUUACAUAGAAAAGCUG-AAAAGCGUCUGCCAAGUGGGCGUGUGGAGCUG-CUGGUAAACGCCCCCACUCCCCACCAACCCACGCUUU
.(((((.............((((...(((.-...))).))))....(((((.((((..(.(..-..).)..)))).))))))))))............... ( -32.00)
>DroEre_CAF1 153358 94 - 1
AGGGGAAAAACUAAUUACACAGAAAAGCUGGAAAAGCGUCUGCC-GGUGGGCGUGUUGGGUUAGAAGGGCCACG--CCCACUCCAUUCCAGCC---GCUC-
.((((((............((((...(((.....))).))))..-(((((((((....((((.....)))))))--))))))...))))..))---....- ( -30.70)
>DroYak_CAF1 154121 94 - 1
AGGGGAAAAACUAAUUACAUAGAAAAGCUGGAAAAGCGUCUGCC-AGUGGGCGUGUUGGGUUAGAAGGGCCACG--CCCACUCCAUACCAGCA---GCUC-
.(((......(((......)))....(((((....((....)).-(((((((((....((((.....)))))))--)))))).....))))).---.)))- ( -28.40)
>DroAna_CAF1 150012 92 - 1
AGGGGAAAAACUAAUUACACAGAAAAGCUGAAAAAGCGUCUGGC-AGUGGGCGUGUUAGCCGAACCGAGGCACG--CCCAC--CAUUUUAACG---GGCC-
.(..((((...........((((...(((.....))).))))..-.(((((((((((...........))))))--)))))--..))))..).---....- ( -29.30)
>DroPer_CAF1 186759 99 - 1
AGGGGAAAAACUAAUUACAUAGAAAAGCUG-AAAAGCGUCUGCCAAGUGGGCGUGUGGAGCUG-CUGGUAAACGCCCCCACUCCCCACCAACCCACGCUUU
.(((((.............((((...(((.-...))).))))....(((((.((((..(.(..-..).)..)))).))))))))))............... ( -32.00)
>consensus
AGGGGAAAAACUAAUUACAUAGAAAAGCUGGAAAAGCGUCUGCC_AGUGGGCGUGUUGGGCUAGAAGGGCCACG__CCCACUCCAUACCAACC___GCUC_
.((................((((...(((.....))).))))....(((((((((...............))))..)))))......))............ (-17.38 = -17.21 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:51 2006