Locus 5072

Sequence ID 2R_DroMel_CAF1
Location 16,473,097 – 16,473,189
Length 92
Max. P 0.827293
window8109

overview

Window 9

Location 16,473,097 – 16,473,189
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 91.09
Mean single sequence MFE -24.05
Consensus MFE -20.23
Energy contribution -20.87
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.84
SVM decision value 0.70
SVM RNA-class probability 0.827293
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16473097 92 - 20766785
UUGUCCGACUUUUGUCAGUCUAUUUGUUUGUUUGGCUACAGUUUUGCAUAGUGGCAAACACCCUCGCAUAUUCAUAUAGGGAUAUGUGAGCA
......(((....)))............((((((.((((...........))))))))))..(((((((((((......))))))))))).. ( -24.70)
>DroSec_CAF1 148354 92 - 1
UUGUCAGACUUUUGUCAGUCUAUUUGUUUGUUUGGCUACAGUUUUGCAUAGUGGCAAACACCCUCGCAUAUUCAUACAGGGAUAUGUGAGCA
.....(((((......))))).......((((((.((((...........))))))))))..(((((((((((......))))))))))).. ( -25.70)
>DroSim_CAF1 145100 92 - 1
UUGUCAGACUUUUGUCAGUCUAUUUGUUUGUUUGGCUACAGUUUUGCAUAGUGGCAAACACCCUCGCAUAUUCAUAUAGGGAUAUGUGAGCA
.....(((((......))))).......((((((.((((...........))))))))))..(((((((((((......))))))))))).. ( -25.70)
>DroEre_CAF1 149710 92 - 1
UUGUCAGACUUUUGUCAGUCUAUUUGUUUGUUUGGCUACAGUUUUGCAUAGUGGCAAACACCCUCGCAUAUUCAUAUAGGGAUAUGUGAGCA
.....(((((......))))).......((((((.((((...........))))))))))..(((((((((((......))))))))))).. ( -25.70)
>DroYak_CAF1 150304 92 - 1
UUGUCAGACUUUUGUCAGUCUAUUUGUUUGUUUGGCUACAGUUUUGCAUAGUGGCAAACACCUUCGCAUAUUCAUAUAGGGAUAUGUGAGCA
.....(((((......))))).......((((((.((((...........))))))))))..(((((((((((......))))))))))).. ( -23.60)
>DroAna_CAF1 146208 80 - 1
UUGUCAGACUUUUGUCGGCUUAUUUGUUUGUUUGGCUACAGUUUUGCAUAUUGUC--------CUGCAUAUGGAU----GGAUAUGUGGGCA
............((((.((.((((..((..(...((.(((((.......))))).--------..))..)..)).----.)))).)).)))) ( -18.90)
>consensus
UUGUCAGACUUUUGUCAGUCUAUUUGUUUGUUUGGCUACAGUUUUGCAUAGUGGCAAACACCCUCGCAUAUUCAUAUAGGGAUAUGUGAGCA
(((((((((....)))............(((..(((....)))..)))...)))))).....(((((((((((......))))))))))).. (-20.23 = -20.87 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:48 2006