Locus 5071

Sequence ID 2R_DroMel_CAF1
Location 16,471,092 – 16,471,201
Length 109
Max. P 0.672609
window8108

overview

Window 8

Location 16,471,092 – 16,471,201
Length 109
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -23.12
Consensus MFE -17.83
Energy contribution -17.83
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.77
SVM decision value 0.30
SVM RNA-class probability 0.672609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16471092 109 + 20766785
ACCCAUGCCACCCACUUCGCCCACACCACCCACUCCGCCC--CCUUGGCAGCAGCUGCGUGUAAACACAUUGUGGCAAUUCUCUCUGGUGCCAUGACUGUGUUCACCUUUU
......................((((..........(((.--....))).((....)))))).(((((((..(((((..((.....)))))))..).))))))........ ( -23.10)
>DroPse_CAF1 180532 90 + 1
-------CAGCCUACUCCACC---------CCCACCCCAC--CCCUG---GCAGCUGCGUGUAAACACAUUGUGGCAAUUCUCUCUGGUGCCAUGACUGUGUUCACCUUUU
-------..(((.........---------..........--....)---))......(((..(((((((..(((((..((.....)))))))..).)))))))))..... ( -19.60)
>DroSec_CAF1 146444 100 + 1
ACCCAUGCCACCCACUUCGCC---------CACUCCGCCC--CCUCGGCAGCAGCUGCGUGUAAACACAUUGUGGCAAUUCUCUCUGGUGCCAUGACUGUGUUCACCUUUU
.....((((((.......((.---------..(((.(((.--....))).).))..))(((....)))...)))))).........((((.(((....)))..)))).... ( -23.10)
>DroSim_CAF1 143199 100 + 1
ACCCAUGCCACCCACUCCGCC---------CUCUCUGCCC--CCUCGGCAGCAGCUGCGUGUAAACACAUUGUGGCAAUUCUCUCUGGUGCCAUGACUGUGUUCACCUUUU
.....((((((.......((.---------..(((((((.--....))))).))..))(((....)))...)))))).........((((.(((....)))..)))).... ( -27.70)
>DroAna_CAF1 144222 95 + 1
-------CCACCCACUUGGCC---------AGCCCCGACCCUCCGCUGCUGCUGCUGCGUGUAAACACAUUGUGGCAAUUCUCCCUGGUGCCAUGACUGUGUUCACCUUUU
-------.....(((.(((((---------(((..((......))..))))..)))).)))..(((((((..(((((..((.....)))))))..).))))))........ ( -25.60)
>DroPer_CAF1 181451 90 + 1
-------CAGCCUACUCCACC---------CCCACCCCAC--CCCUG---GCAGCUGCGUGUAAACACAUUGUGGCAAUUCUCUCUGGUGCCAUGACUGUGUUCACCUUUU
-------..(((.........---------..........--....)---))......(((..(((((((..(((((..((.....)))))))..).)))))))))..... ( -19.60)
>consensus
_______CCACCCACUCCGCC_________CACUCCGCCC__CCUCGGCAGCAGCUGCGUGUAAACACAUUGUGGCAAUUCUCUCUGGUGCCAUGACUGUGUUCACCUUUU
..................................................((....))(((..(((((((..(((((..((.....)))))))..).)))))))))..... (-17.83 = -17.83 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:47 2006