Locus 5065

Sequence ID 2R_DroMel_CAF1
Location 16,452,849 – 16,452,966
Length 117
Max. P 0.632678
window8097

overview

Window 7

Location 16,452,849 – 16,452,966
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 94.87
Mean single sequence MFE -40.42
Consensus MFE -36.29
Energy contribution -36.82
Covariance contribution 0.53
Combinations/Pair 1.06
Mean z-score -1.18
Structure conservation index 0.90
SVM decision value 0.20
SVM RNA-class probability 0.632678
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16452849 117 - 20766785
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAGAUCCAGACGGAGGAUGGCAUGGGGCAGAGCAUAACCCUCAUAGAUGGGGACGGUGUGGGAGACACCAUCACCGGAG
....((((((((........((((.......)))).((((..(((....)))...))))((((((...........)))))).))))))))((((((((......))).)))))... ( -42.90)
>DroSim_CAF1 125046 117 - 1
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAGAUCCAGACGGAGGAUGGCAUGGGGCAGAGCAUAACCCUCAUAGAUGGGCACGGUGUGGGAGACACCAUCACCAGAG
....(((.......((.(((.(((.....((..(((((((..(((....)))...)))).))).)).(((.......)))...))).)))))(((((((......))).))))))). ( -37.50)
>DroEre_CAF1 128489 117 - 1
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAGAUCCAGACGGAGGAUGGCAUGGGGCAGAGCAUAACCCUCAUAGAUGGGCACGGUGUGGGAGACACCAUCACCGGAG
.....((((.....((.(((.(((.....((..(((((((..(((....)))...)))).))).)).(((.......)))...))).)))))(((((((......))).)))))))) ( -39.50)
>DroWil_CAF1 284834 117 - 1
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAAGUCCAGACGGAGGAUGGCGUGGGGAAGGGCAUAACCUUCAUAGAUUGGGACGGUGUGGGAGACACCAUCUCCGGAA
..(((((.....((((....((((.......)))).(((...(((..(((........)))..)))..)))...))))....)))))((((.(((((.....))))).)).)).... ( -37.10)
>DroMoj_CAF1 212196 117 - 1
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAAGUCCAGACGGAGGAUGGCAUGGGGCAGGGCAUAACCUUCAUAGAUGGGGACGGUGUGGGAGACACCAUCACCGGAA
....((((((((.....(((((((.......)))).((((..(((....)))...))))....)))(((......))).....))))))))((((((((......))).)))))... ( -41.70)
>DroAna_CAF1 124859 117 - 1
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAGAUCCAGACGGAGGAUGGCGUGGGGAAGGGCAUAACCUUCAUAGAUGGGGACGGUGUGGGAAACACCAUCUCCGGAA
.(((((((((((........((((.......)))).((((..(((....)))...)))).....(((((......)))))...)))))))).(((((.....)))))...))).... ( -43.80)
>consensus
AGGAUCUUCAUCAGGUAGUCGGUCAAAUCGCGACCAGCCAGAUCCAGACGGAGGAUGGCAUGGGGCAGAGCAUAACCCUCAUAGAUGGGGACGGUGUGGGAGACACCAUCACCGGAA
....((((((((........((((.......)))).((((..(((....)))...))))((((((...........)))))).))))))))((((((((......))).)))))... (-36.29 = -36.82 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:37 2006