Locus 5063

Sequence ID 2R_DroMel_CAF1
Location 16,446,256 – 16,446,352
Length 96
Max. P 0.514985
window8093

overview

Window 3

Location 16,446,256 – 16,446,352
Length 96
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.19
Mean single sequence MFE -27.22
Consensus MFE -12.78
Energy contribution -14.00
Covariance contribution 1.22
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.47
SVM decision value -0.04
SVM RNA-class probability 0.514985
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16446256 96 + 20766785
UGAUAGCCACAUUGAGAGAUGGUC-------UUCC----GAG-GGGAAGAAAU------GCGAAAGAUAGAGAUCGGAAGACGAAUGAAUCAUCUAGAUGGGCGAGGAAAUUCC
.....(((.((((...((((((((-------((((----((.-..........------.(....).......)))))))))........))))).)))))))........... ( -27.21)
>DroSec_CAF1 121806 103 + 1
UGAUAGCCACAUUGAGAGAUAGUCGUGCACUUUCC----GAG-GGGAAGAAAU------GCGAAAGAUAGAGAUCGGAAGACGAAUGAAUCAUCUAGAUGGGCGAGGAAAUUCC
.....(((.((((.((((((.(((.((((((((((----...-))))))...)------)))...))).....((....)).......))).))).)))))))........... ( -25.10)
>DroSim_CAF1 118461 103 + 1
UGAUAGCCACAUUGAGAGAUGGUCGUGCACUUUCC----GAG-GGGAAGAAAU------GCGAAAGAUAGAGAUCGGAAGACGAAUGAAUCAUCUAGAUGGGCGAGGAAAUUCC
.....(((.((((...(((((((((((((((((((----...-))))))...)------))............((....))...))).))))))).)))))))........... ( -27.80)
>DroEre_CAF1 121935 103 + 1
UGAUAGCCACAUUGAGAGAUGGUCGAGCGCCUUCC----GAG-GGGAAUAAAU------GCGAAAGACAGAGAUCGGGAGGCGAAUGAAUCAUCUAGAUGGGCGAAGAAAUACC
.....(((.((((...(((((((((..((((((((----((.-.........(------((....).))....))))))))))..)).))))))).)))))))........... ( -38.94)
>DroYak_CAF1 123026 104 + 1
UGAUAGCCACAUUGAGAGAUGGCCGAGCACUUUCC----GUGGGGGAAUAAAU------GCGAAAGAUAGAGAUCGGAAGGCGAAUGAAUCAUCUGGAUGGGCGAGGAAAUACC
.....(((.((((.((((((.(((..(((..((((----.....))))....)------))....(((....)))....)))......))).))).)))))))........... ( -25.70)
>DroAna_CAF1 117030 103 + 1
UGAUGGGCGUAUUGAGAGAUGGCAAAACAAUCACAAAAAGGG-GGGACGAGACGGCCAAGCAAAAGGCAUCUAUCUGGCAGGGAAUGAAUCAUCUAG----------CAAGACC
.(((((.(((.(((..((((((...................(-....)......(((........)))..))))))..)))...)))..)))))...----------....... ( -18.60)
>consensus
UGAUAGCCACAUUGAGAGAUGGUCGAGCACUUUCC____GAG_GGGAAGAAAU______GCGAAAGAUAGAGAUCGGAAGACGAAUGAAUCAUCUAGAUGGGCGAGGAAAUACC
.....(((.((((...(((((((.....................................(....).......(((.....)))....))))))).)))))))........... (-12.78 = -14.00 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:33 2006