Locus 5059

Sequence ID 2R_DroMel_CAF1
Location 16,435,167 – 16,435,257
Length 90
Max. P 0.506275
window8086

overview

Window 6

Location 16,435,167 – 16,435,257
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.11
Mean single sequence MFE -25.07
Consensus MFE -16.31
Energy contribution -17.81
Covariance contribution 1.50
Combinations/Pair 1.23
Mean z-score -1.15
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.506275
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16435167 90 + 20766785
AUGCGAGGAGA----------AAAAGCUUUUCAAACUUAUUUAACUUAUUGU-CA-UGCGGAGGUCCCUGCAGGACCACUGAAGUCUCGAUGGGCUGUUGUU
....((((((.----------.....))))))............(((((((.-..-..(((.(((((.....))))).)))......)))))))........ ( -21.50)
>DroSec_CAF1 110759 90 + 1
AUGCGAGGAGA----------AAAGGCUUUUCAAACUUAUUUAACUUAUUGU-CA-UGCGGAGGUCCCUGCAGGACCUCUGAAGUCUCGAUGGGCUGUUUUU
....((((((.----------.....))))))............(((((((.-..-..(((((((((.....)))))))))......)))))))........ ( -26.40)
>DroSim_CAF1 106486 82 + 1
AUGCGAGGAGA----------AAAAGCUUUUCAAACUUAUUUAACUUAUUGU-CA-UGCGGAGGUCCCUGCAGGACCUCCGAAGUCUCGAUGGG--------
....((((((.----------.....))))))............(((((((.-..-..(((((((((.....)))))))))......)))))))-------- ( -28.20)
>DroEre_CAF1 110577 88 + 1
GUGCGAGGAGA----------AAAAGCUUUAGAAACUUAUUUAACUCAUUGU-CA-UGCGGAGGUCCCUGCAGGACCUCUAAAGUCUCAAUGGGCAGUU--U
.((((((..((----------(.(((.........))).)))..)))((((.-.(-(..((((((((.....))))))))...))..))))..)))...--. ( -23.20)
>DroYak_CAF1 111510 91 + 1
GUGCGAGGAGA----------AAAAGCUUUUCAAACUUAUUUAACUUAUUGUCCA-UGCCGAGGUCCCUGCAGGACCUUCGAAGUCUCAAUGGGGCGUUUUU
..((((((((.----------.....))))))............(((((((...(-(..((((((((.....))))).)))..))..)))))))))...... ( -24.50)
>DroPer_CAF1 141068 90 + 1
AUGGUGGGGGAAAAUGCGGCAGAAAGCUUUGCA-ACUUGUUUAACGUAUUGU-CGGAGAGGACUGCCCCUUAGGGCCUUC--UGUCUCCUUGGG--------
(..(((.(..(((..(..(((((....))))).-.)...)))..).)))..)-.((((((((..((((....))))..))--).))))).....-------- ( -26.60)
>consensus
AUGCGAGGAGA__________AAAAGCUUUUCAAACUUAUUUAACUUAUUGU_CA_UGCGGAGGUCCCUGCAGGACCUCCGAAGUCUCGAUGGGC_GUU__U
....((((((................))))))............(((((((.......(((((((((.....)))))))))......)))))))........ (-16.31 = -17.81 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:27 2006