Locus 5056

Sequence ID 2R_DroMel_CAF1
Location 16,430,097 – 16,430,197
Length 100
Max. P 0.816530
window8080

overview

Window 0

Location 16,430,097 – 16,430,197
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 78.45
Mean single sequence MFE -33.86
Consensus MFE -18.02
Energy contribution -18.78
Covariance contribution 0.75
Combinations/Pair 1.30
Mean z-score -2.13
Structure conservation index 0.53
SVM decision value 0.67
SVM RNA-class probability 0.816530
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16430097 100 + 20766785
CCCUGACGCAGUUGCGCAGCAUGGACAAUCACAUGGCCAGUAUGCUGCAGCAGCACGCGAAAAACGGCGGAGCCCUGCCCUACGGUCCACCAACUCCGCC
......(((.((((((((((((((.((......)).)))...)))))).)))))..)))......(((((((...((..(....)..))....))))))) ( -37.90)
>DroPse_CAF1 135119 100 + 1
CGCUGACGCAGCUGCGAAAUAUGGAUCAGCACAUGGCAAGCAUGCUGCAGCAGCACGCCAAGAACGGAGGAGUCUUACCCUACGGCACACCAACUCCUCC
.((((..((((((((....((((........))))....))).)))))..))))...........((((((((......(....).......)))))))) ( -36.92)
>DroGri_CAF1 122785 94 + 1
CGUUAACUCAGAUGCGCAACAUGGAUAGUCAUAUGGCUAGCAUGCUGCAACAGCAUGCCAAGAAUGG------CCUGAACUAUGGUCCCCCAACACCACC
.......(((((((((((.((((..(((((....))))).)))).)))....))))((((....)))------)))))....((((........)))).. ( -25.80)
>DroMoj_CAF1 178318 94 + 1
CGCUGACUCAGCUGCGCCACAUGGACAAUCACAUGGCCAGCAUGCUGCAGCAGCACUCGAAGAACGG------CCUGAGCUAUGGGCCGCCAACACCGCC
.((((.(((((((((....((((........))))....))).)))).))))))..........(((------(((.......))))))........... ( -33.50)
>DroAna_CAF1 101066 100 + 1
CACUGACUCAGCUGCGCAACAUGGACAGCCACAUGGCCAGCAUGCUGCAGCAGCACGCCAAGAAUGGAGGCAGCUUGCCAUACGGUCCGCCCACCCCUCC
..........((((((((.((((....(((....)))...)))).))).)))))...........(((((..((..(((....)))..)).....))))) ( -32.10)
>DroPer_CAF1 136218 100 + 1
CGCUGACGCAGCUGCGAAAUAUGGAUCAGCACAUGGCAAGCAUGCUGCAGCAGCACGCCAAGAACGGAGGAGUCUUACCCUACGGCACACCAACUCCUCC
.((((..((((((((....((((........))))....))).)))))..))))...........((((((((......(....).......)))))))) ( -36.92)
>consensus
CGCUGACGCAGCUGCGCAACAUGGACAAUCACAUGGCCAGCAUGCUGCAGCAGCACGCCAAGAACGGAGGAG_CCUGCCCUACGGUCCACCAACUCCUCC
.((((...(((((((....((((........))))....))).))))...))))...........(((((.........................))))) (-18.02 = -18.78 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:21 2006