Locus 5050

Sequence ID 2R_DroMel_CAF1
Location 16,411,221 – 16,411,320
Length 99
Max. P 0.923669
window8069

overview

Window 9

Location 16,411,221 – 16,411,320
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 74.07
Mean single sequence MFE -40.78
Consensus MFE -24.21
Energy contribution -24.93
Covariance contribution 0.73
Combinations/Pair 1.42
Mean z-score -1.79
Structure conservation index 0.59
SVM decision value 1.16
SVM RNA-class probability 0.923669
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16411221 99 + 20766785
ACAGCCAUCUUGCCGUC---------GAGCCAAGCAUGCUGACUCGUUCGCGCUUGCCCUGCCAAGUGGUUGCUAGAGCGGGUCGGC-UAUACUCGCUGUGCGUAGGCC
...(((....(((((.(---------(((........((((((((((((..((..(((((....)).))).))..))))))))))))-....)))).)).)))..))). ( -38.50)
>DroSec_CAF1 81001 99 + 1
ACAGCCAUCUUGCCGUA---------GAGCCAAGCAUGCUGACUCGCUCGCGCUCGCCCUGCCAAGUGGUUGCUAGAGCGGGUCGGC-UAUACUCGCUGUGCGUAGACC
.......(((...((((---------.(((.......((((((((((((..((..(((((....)).))).))..))))))))))))-.......))).)))).))).. ( -39.94)
>DroSim_CAF1 82880 99 + 1
ACAGCCAUCUUGCCGUA---------GAGCCAAGCAUGCUGACUCGCUCGCGCUCGCCUUGCCAAGUGAUUGCUAGAGCGGGUCGGC-UAUACUCGCUGUGCGUAGGCC
...(((....(((.(((---------.(((.......(((((((((((((((.((((........)))).)))..))))))))))))-.......))).))))))))). ( -40.34)
>DroEre_CAF1 86606 99 + 1
ACAGCCAUCUUGCUUUC---------GAGCCAAGCGUGCGGACUCGCUCGCGCCUGCUCUGCAAAGUGGUUGCUAGAGCGGGCUGGC-UACACUCGCUGUGCGUAGGCC
...(((...........---------.(((((.(((.(((....))).)))(((((((((((((.....)))).)))))))))))))-).(((.....)))....))). ( -44.40)
>DroYak_CAF1 86768 99 + 1
ACAGCCAUCUUGCUUUC---------CAGCCCAGCGUGCUCACUCGCUCGCUCUCGCUCUGACUGGCGGUUGCUAGAGCAGGCCAGC-UACACUCGCUGUGCGUAGGCC
...(((...(((((((.---------(((((.((((.((......)).))))...(((......))))))))..)))))))((((((-.......)))).))...))). ( -34.80)
>DroMoj_CAF1 149485 107 + 1
GCUGCCAUCUUAACGCGAGCAGCACUGAGCAUAGCUAGCUGUCGCGCUCUG-ACUACUGCGCAGC-UGCAAGUCAGAGCGAGAUGGUAAGCGUUUGGUGUGCGUAAUGC
(((((((((((...((((.((((....(((...))).))))))))((((((-(((..((((....-))))))))))))))))))))).))).................. ( -46.70)
>consensus
ACAGCCAUCUUGCCGUC_________GAGCCAAGCAUGCUGACUCGCUCGCGCUCGCCCUGCCAAGUGGUUGCUAGAGCGGGUCGGC_UACACUCGCUGUGCGUAGGCC
(((((.......................((...))..(((((((((((((((.((((........)))).)))..))))))))))))........)))))......... (-24.21 = -24.93 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:11 2006