Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,758,928 – 2,759,030 |
Length | 102 |
Max. P | 0.722127 |
Location | 2,758,928 – 2,759,030 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.76 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -21.52 |
Energy contribution | -21.58 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.26 |
Mean z-score | -1.90 |
Structure conservation index | 0.64 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2758928 102 + 20766785 UGACGUGCGGAU-------CAAGCUGGAUGAAGAACCAAAACUUCUAAUCCGCACGUUCGCCGCAGCA------AUAGA----AAAUGCUGUAGUGGUGCCCUUU-AUGCACUUGUGACA .(((((((((((-------.(((.(((........)))...)))...)))))))))))(((..(((((------.....----...)))))..)))((((.....-..))))........ ( -34.40) >DroSim_CAF1 9205 102 + 1 UGACGUGCGGAU-------CAAGCUGGAUGGAGAAGCAAAACUUCUAAUCCGCACGUUCGCCGCAGCA------AUAGA----AAAUGCUGUAGUGGUGCCCUUU-UUGCACUUGUGACA .(((((((((((-------....((....))(((((.....))))).)))))))))))(((..(((((------.....----...)))))..)))((((.....-..))))........ ( -35.40) >DroEre_CAF1 9685 109 + 1 UGACGUGCGGAUUGCGGACCAGGCUGGAUGGAGAAGCAAAACUUCUAAUUCGCACGUUCGCCGCAGCA------AUAGAA-AAAAAUGCUGUAG---UGCCCUUU-AUUCACUUGUGACG .((((((((((((.....(((.......)))(((((.....)))))))))))))))))(((..(((((------......-.....)))))..)---))......-..(((....))).. ( -32.50) >DroYak_CAF1 9047 110 + 1 UGACGUGCGGAU-------CAAGCUGCAUUGAGAACCUAAACUCCUAAUUCGCACGUUCGUCGCAGUGAAACGAGUAGAAGGAAAAUGCUGUAG---AGCCCUUUCAUUCACUUGUGACG .(((((((((((-------(((......))))((........))....))))))))))((((((((((((.(........)((((..(((....---)))..)))).))))).))))))) ( -32.40) >consensus UGACGUGCGGAU_______CAAGCUGGAUGGAGAACCAAAACUUCUAAUCCGCACGUUCGCCGCAGCA______AUAGA____AAAUGCUGUAG___UGCCCUUU_AUGCACUUGUGACA .(((((((((((.................((((........))))..)))))))))))(((..(((((..................)))))..)))........................ (-21.52 = -21.58 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:26 2006