| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,397,485 – 16,397,586 |
| Length | 101 |
| Max. P | 0.769576 |
| Location | 16,397,485 – 16,397,586 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.97 |
| Mean single sequence MFE | -23.79 |
| Consensus MFE | -13.04 |
| Energy contribution | -12.98 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.769576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16397485 101 + 20766785 ---UGGA-AACGGGGACA--GGAAGGGCAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAGGCAAUUCCUUGUGGCAGGCCGCAG--AUAUUAGCACCCAG---AA-- ---.(..-..)(((..((--((((((....)).((((.........(((((.....)))))......)))))))))(((((....))))).--......)..)))..---..-- ( -26.06) >DroGri_CAF1 82453 101 + 1 ---AGGC-UGGCGGAAUGGC--UCAGGAAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAAGCAAUUUCUUGCGGCAGGCCACAA--AUAUUAGCAACAGC---AA-- ---.(((-(.(((((.((((--((((....)(((((....)))))..)))))))..)))........((((....)))).)).))))....--......((....))---..-- ( -25.10) >DroWil_CAF1 137916 108 + 1 UGGUGUCAAG--GGAGGG--GCAAAGAAAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAAGCAAUUUCUUGCGGCAGGCCGCAGAGAUAUUAACACCCCUCAAAU-- ..........--.(((((--(.............(((.........(((((.....)))))......)))((((((.((((....)))))))))).......))))))....-- ( -27.56) >DroYak_CAF1 72546 91 + 1 ----------------CA--GGGAGGGCAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAGGCAAUUUCUUGUGGCAGGCCGCAG--AUAUUAGCACCCAG---UAGA ----------------..--(((..(((..((((..(((.......(((((.....)))))((((......)))))))..)))))))((..--......)).)))..---.... ( -23.60) >DroMoj_CAF1 125133 87 + 1 --------------------UUACGAAAAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAAGCAAUUUCUUGCGGCAGGCCACAA--AUAUUAGCACCAGC---AA-- --------------------..........(((((((((.......(((((.....)))))((((......))))))))))))).......--......((....))---..-- ( -15.60) >DroAna_CAF1 66869 103 + 1 AGGUGGA-AGU-GGAAGU--GGAAGGGAAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAAGCAAUUUCUUGCGGCAGGCCGCAG--AUAUUAGCACCCAG---AA-- .((((..-(((-(...((--((........(((((((((.......(((((.....)))))((((......))))))))))))).))))..--.))))..))))...---..-- ( -24.80) >consensus ___UGG__AG__GGAACA__GGAAGGGAAACUGUUGCAAAUAAUAAAUGAGUCAAGUUCAUGAAAAAGCAAUUUCUUGCGGCAGGCCGCAG__AUAUUAGCACCCAG___AA__ ..............................(((((((((.......(((((.....)))))((((......))))))))))))).............................. (-13.04 = -12.98 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:06 2006