| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,396,577 – 16,396,675 |
| Length | 98 |
| Max. P | 0.658688 |
| Location | 16,396,577 – 16,396,675 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.50 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -15.48 |
| Energy contribution | -16.70 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16396577 98 + 20766785 UUUUGGUCUAAGGCUGCG----AG-CCAUUAAAUUGGCAUAACGUGCAUGACGUGCA-CGGCACGUAAAUAGGCGUUAAAAUGUCGGUUAAACAA-AACAUUUAU .....(((((..(((((.----.(-(((......))))....(((((((...)))))-))))).))...)))))....((((((..(.....)..-.)))))).. ( -27.60) >DroVir_CAF1 107125 91 + 1 GUAGGCGC------UG-----UGC-CCAUUAAAUUGGCAUAACGUGCAUGACGUGCA-CGGCACGCAAAUAGGCGUUAAAAUGUCGGUUAAACAA-AACAUUUAU ...(((((------((-----(((-(.........)))))).(((((((...)))))-))))((((......))))......)))..........-......... ( -24.10) >DroGri_CAF1 81193 95 + 1 GAAGGCGCC----AGG--GCAGAG--CAUUAAAUUGGCGUAACGUGCAUGACGUGCA-AGGCACGCAAAUAGGCGUUAAAAUGUCGGUUAAACAA-AACAUUUAU ...((((((----...--((...)--).........((((..(.(((((...)))))-.)..)))).....)))))).((((((..(.....)..-.)))))).. ( -22.70) >DroWil_CAF1 136039 93 + 1 UUGGGCGCU-------CG----AGCCCAUUAAAUUGGCAUAACGUGCAUGACGUGCA-CGGCACGUAAAUAGGCGUUAAAAUGUCGGUUAAACAAAAACAUUUAU .(((((...-------..----.)))))...(((((((((..(((((((...)))))-))..((((......))))....)))))))))................ ( -28.40) >DroMoj_CAF1 123756 97 + 1 AUAGUCGCG----CUG--GCAUAC-CUCUUAAAUUGGCCUAACGUGCAUGACGUGCCCCGGCACGCAAAUAGGCGUUAAAAUGUCGGUUAAACAA-AACAUUUAU ...((...(----(((--((((.(-(.........))..((((((..((..(((((....)))))...))..))))))..))))))))...))..-......... ( -23.80) >DroAna_CAF1 65675 89 + 1 UUUUGGUUUAAGGCUGCG----GG-CCAUUAAAUUGGCAU---------GACGUGCA-UGGCACGUAAAUAGGCGUUAAAAUGUCGGUUAAACAA-AACAUUUAU ((((((((((((((....----.)-)).))))))((((..---------.((((((.-..)))))).....(((((....))))).))))..)))-))....... ( -20.80) >consensus UUAGGCGCU____CUG______AG_CCAUUAAAUUGGCAUAACGUGCAUGACGUGCA_CGGCACGCAAAUAGGCGUUAAAAUGUCGGUUAAACAA_AACAUUUAU ...............................((((((((((((((..((..(((((....)))))...))..))))))...))))))))................ (-15.48 = -16.70 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:05 2006