| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,394,606 – 16,394,718 |
| Length | 112 |
| Max. P | 0.871387 |
| Location | 16,394,606 – 16,394,718 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.78 |
| Mean single sequence MFE | -19.04 |
| Consensus MFE | -13.31 |
| Energy contribution | -14.02 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16394606 112 + 20766785 CCGAAGUUGCUGCCUCCUACAAACAUGGUCUUAAUCGAGAUCAAUUACCGCCGUGACAGUCAAAACAUGUCUCGACACAGCCAAACACACA--CGCACACAAAACACA----CACACU .....(((((((.............(((((((....)))))))......(.((.((((((....)).)))).)).).))))..))).....--...............----...... ( -17.80) >DroVir_CAF1 104648 89 + 1 ------------UCUCGU----ACAUGGCCUUAAUCGAGAUCAAUUACCGUCGUGACAGUCAAAACAUGUCUCGGCGCA-C---ACACAAAGUUGC-----ACACUCG----CACACU ------------(((((.----.............)))))........(((((.((((((....)).)))).)))))..-.---......((((((-----......)----)).))) ( -18.44) >DroSec_CAF1 64484 94 + 1 CCGAAGUUGCUGCCUCCUACAAACAUGGUCUUAAUCGAGAUCAAUUACCGCCGUGACAGUCAAAACAUGUCUCGACACAGC--------------------AAACACA----CACACA ......((((((.............(((((((....)))))))......(.((.((((((....)).)))).)).).))))--------------------)).....----...... ( -19.60) >DroSim_CAF1 66342 96 + 1 CCGAAGUUGCUGCCUCCUACAAACAUGGUCUUAAUCGAGAUCAAUUACCGCCGUGACAGUCAAAACAUGUCUCGACACAGC--------------------AAACACACA--CACACA ......((((((.............(((((((....)))))))......(.((.((((((....)).)))).)).).))))--------------------)).......--...... ( -19.60) >DroEre_CAF1 69929 91 + 1 CCGAAGUUGCUGCCUCCUACAAACAUGGUCUUAAUCGAGAUCAAUUACCGCCGUGACAGUCAAAACAUGUCUCGACACAGC--------------------ACACACACAG------- .....(((((((.............(((((((....)))))))......(.((.((((((....)).)))).)).).))))--------------------).))......------- ( -19.40) >DroYak_CAF1 69615 98 + 1 GCGAAGUUGCUGCCUCCUACAAACAUGGUCUUAAUCGAGAUCAAUUACCGCCGUGACAGUCAAAACAUGUCUCGACACAGC--------------------ACACACACAGACACACA .....(((((((.............(((((((....)))))))......(.((.((((((....)).)))).)).).))))--------------------).))............. ( -19.40) >consensus CCGAAGUUGCUGCCUCCUACAAACAUGGUCUUAAUCGAGAUCAAUUACCGCCGUGACAGUCAAAACAUGUCUCGACACAGC____________________AAACACA____CACACA ........((((.............(((((((....)))))))......(.((.((((((....)).)))).)).).))))..................................... (-13.31 = -14.02 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:04 2006