Locus 5043

Sequence ID 2R_DroMel_CAF1
Location 16,389,922 – 16,390,040
Length 118
Max. P 0.522411
window8061

overview

Window 1

Location 16,389,922 – 16,390,040
Length 118
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -34.38
Consensus MFE -21.50
Energy contribution -23.33
Covariance contribution 1.84
Combinations/Pair 1.23
Mean z-score -1.22
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.522411
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16389922 118 - 20766785
GAAUGCCAUACUGGCAUUAGUUUCUCUCAGUGCACCGCUGGCGAAAGAC-GGUUUCAUAUUCUGAUGUGAAAGGUGGAUAGAAAGUCGGGCGCCCGGAGUAUAACGUGCUCGAACUCCA
.((((((.....))))))(((((((.((.((.((((((((.(....).)-)))(((((((....))))))).)))).)).)).)).(((....)))((((((...)))))))))))... ( -37.20)
>DroVir_CAF1 99784 91 - 1
-----------AAAAAGUGG--UCUU-UAGU--------------GUGUGGCCUUUAUAUUCGGAUGUGGAACGUGGAGAGAAAGUCGGGGGCGCGCAGUAUGACAUGCUCGAACUCCA
-----------....(((((--((..-((.(--------------(((((.(((..((.(((..(((.....))).....))).))..))).)))))).)).))).))))......... ( -22.30)
>DroSec_CAF1 59936 99 - 1
-------------------GUUUCUCUCAGUGCACCGCUGGCGAAAGAC-GGUUUCAUAUUCUGAUGUGAAAGGUGGAGAGAAAGUCGGGCGCUCGGAGUAUAACGUGCUCGAACUCCA
-------------------.((((((((....((((((((.(....).)-)))(((((((....))))))).)))))))))))).((((((((............))))))))...... ( -35.30)
>DroSim_CAF1 61759 104 - 1
GAA--------------UAGUUUCUCUCAGUACACCGCUGGCGAAAGAC-GGUUUCAUAUUCUGAUGUGAAAGGUGGAGAGGAAGUCGGGCGCCCGGAGUAUAACGUGCUCGAACUCCA
...--------------...((((((((....((((((((.(....).)-)))(((((((....))))))).)))))))))))).((((((((............))))))))...... ( -34.30)
>DroEre_CAF1 65293 117 - 1
GC-CGCCCUACUGGCGAUAUUUUCUCAGAGUGCACCACUGGCGAAAGAC-GGUUUCAUAUUCUGAUGUGAAAGGUGGAGAGGAAGUCGGGCGCCCGGAGUAUGACGUGCUCGAACUCCA
((-((((.....)))(((.(((((((......((((((((.(....).)-)))(((((((....))))))).))))))))))).))).)))....(((((.(((.....))).))))). ( -41.10)
>DroYak_CAF1 64763 114 - 1
----AACCUACUAAAGAUAUUUUCUCUAAGUGCACCACCGGCGAAAGAC-GGUUUCAUAUUCUGAUGUGAAAGGUGGAGAGGAAGUCGGGCGCACGGAGUAUAACGUGCUCGAACUCCA
----....((((..(((.....)))...))))((((((((.(....).)-)))(((((((....))))))).))))....(((..((((((((............))))))))..))). ( -36.10)
>consensus
___________U_____UAGUUUCUCUCAGUGCACCGCUGGCGAAAGAC_GGUUUCAUAUUCUGAUGUGAAAGGUGGAGAGAAAGUCGGGCGCCCGGAGUAUAACGUGCUCGAACUCCA
....................((((((((....(((((((..(....)...)))(((((((....))))))).)))))))))))).((((((((............))))))))...... (-21.50 = -23.33 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:03 2006