Locus 5042

Sequence ID 2R_DroMel_CAF1
Location 16,389,100 – 16,389,201
Length 101
Max. P 0.536859
window8060

overview

Window 0

Location 16,389,100 – 16,389,201
Length 101
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 85.93
Mean single sequence MFE -39.12
Consensus MFE -24.41
Energy contribution -25.06
Covariance contribution 0.65
Combinations/Pair 1.14
Mean z-score -2.09
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.536859
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16389100 101 + 20766785
GUGUGGGCCCCUUUUUGCAUUUGGACUUUACGAUGGCCGAAAUG----GCAGAGAGGAGCAUGUGGAAGAUGGCCCUGGCCGCCAAACGUGGCACA--------CAACUCGUG
((((((((((((((((((.(((((.((.......)))))))...----)))))))))..(....)......)))))..(((((.....))))))))--------)........ ( -37.40)
>DroSec_CAF1 59112 100 + 1
GUGUGGG-CCCUCUUUGCAUUUGGACUUUACGAUGGCCAAAAUG----GCAGAGAGGAGCAUGUGGAAGAUGGCCCUGGCCGCCAAACGUGGCACA--------CAACUCGUG
(.((..(-((((((((((.(((((.((.......)))))))...----))))))))).)).((((......(((....)))((((....)))).))--------)))).)... ( -38.90)
>DroSim_CAF1 60932 100 + 1
GUGUGGG-CCCUCUUUGCAUUUGGACUUUACGAUGGCCGAAAUG----GCAGAGAGGAGCAUGUGGAAGAUGGCCCUGGCCGCCAAACGUGGCACA--------CAACUCGUG
(.((..(-((((((((((.(((((.((.......)))))))...----))))))))).)).((((......(((....)))((((....)))).))--------)))).)... ( -38.60)
>DroEre_CAF1 64485 100 + 1
GUGUGGG-CCCUCUUUGCAUUUGGCCUUUACUAUGGCCGAAAUG----AAGGAGGGGAGCAUGUGGAAGAUGGCCAUGGCCGCCAAACGUGGCACA--------CAACUCGUG
.......-((((((((.(((((((((........)))).)))))----))))))))(((..((((......(((....)))((((....)))).))--------)).)))... ( -42.60)
>DroYak_CAF1 63897 100 + 1
GUGUGGG-CCCUCUUUGCAUUUG------------GCCGAAAUGCGAGAGAGAGUGGAGCAUGUGGAAGAUGGCCAUGGCCGCCAAACGUGGCACACACAAACACAACUUGUG
(((((((-((((((((((((((.------------....)))))).)))))).((((..(((.......))).))))))))((((....)))).)))))...(((.....))) ( -38.10)
>consensus
GUGUGGG_CCCUCUUUGCAUUUGGACUUUACGAUGGCCGAAAUG____GCAGAGAGGAGCAUGUGGAAGAUGGCCCUGGCCGCCAAACGUGGCACA________CAACUCGUG
((((.....(((((((((.(((((.(........).))))).......)))))))))..(((((....(.((((....)))))...))))))))).................. (-24.41 = -25.06 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:02 2006