Locus 5040

Sequence ID 2R_DroMel_CAF1
Location 16,381,196 – 16,381,304
Length 108
Max. P 0.732789
window8058

overview

Window 8

Location 16,381,196 – 16,381,304
Length 108
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 77.26
Mean single sequence MFE -29.35
Consensus MFE -22.13
Energy contribution -23.02
Covariance contribution 0.89
Combinations/Pair 1.04
Mean z-score -1.07
Structure conservation index 0.75
SVM decision value 0.43
SVM RNA-class probability 0.732789
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16381196 108 + 20766785
CCUUUCACUCCGUCUGUGCUUUCCAAC-----CCGUUGCAGUUUCGCGUCUGGAUAAGGAAUUUGUGGGGCCAUUCGGCCUGCUGCUGCCAGAUGUGACCCAAUUGCCUGCCA
.....(((.......))).........-----..((.((((((((((((((((....((.....(..((.((....))))..)..)).))))))))))...))))))..)).. ( -30.50)
>DroPse_CAF1 83584 112 + 1
UCUUUCGCUUUAUCCAUUUUUUUCAUC-UUUUUCGUUGCAGUUGCGCGUCUGGAUAAGGAAUUUGUGGGACCAUUCGGGCUGCUCCUGCCAGAUGUGACCCAAUUGCCUGCCA
...........................-......((.((((((((((((((((...((((....(..(..((....)).)..))))).)))))))))...)))))))..)).. ( -30.70)
>DroGri_CAF1 65106 99 + 1
---------CAU---GUUGUGCC-ACUUUUCCAC-UUGCAGUUUCGCGUCUGGAUAAGGAAUUUGUGGGGCCAUUUGGUCUGAUGCUGCCAGAUGUGACCCAAUUGCCUGCCA
---------...---........-..........-..((((((((((((((((....((.....((.(((((....))))).)).)).))))))))))...))))))...... ( -28.10)
>DroMoj_CAF1 100486 96 + 1
---------CAU---GUUCCUUCGCUCCUU-----UUGCAGUUUCGCGUCUGGAUAAGGAAUUUGUGGGGCCAUUCGGUCUGCUGCUGCCAGAUGUGACCCAAUUGCCUGCCA
---------((.---(((((((...(((..-----.(((......)))...))).))))))).))..((((.(((.((((..(((....)))....)))).))).)))).... ( -28.40)
>DroAna_CAF1 50774 95 + 1
------------UUUCUUUCUUCCUAC------CAUUUCAGUUUCGCGUCUGGAUAAGGAAUUUGUGGGGCCAUUCGGCCUGCUUCUGCCAGAUGUGACCCAAUUGCCUGCCA
------------...............------.......(..((((((((((....((((...(..((.((....))))..))))).))))))))))..)............ ( -26.70)
>DroPer_CAF1 85253 112 + 1
UCUUUCGCUUUAUCCAUUUUUUUCAUC-UUUUUCGUUGCAGUUGCGCGUCUGGAUAAGGAAUUUGUCGGACCAUUCGGGCUGCUCCUGCCAGAUGUGACCCAAUUGCCUGCCA
...........................-......((.((((((((((((((((...((((....(((.((....)).)))...)))).)))))))))...)))))))..)).. ( -31.70)
>consensus
_________CAAUC_GUUUUUUCCAUC_UU___CGUUGCAGUUUCGCGUCUGGAUAAGGAAUUUGUGGGGCCAUUCGGCCUGCUGCUGCCAGAUGUGACCCAAUUGCCUGCCA
.....................................((((((((((((((((....((.....((.(((((....)))))))..)).))))))))))...))))))...... (-22.13 = -23.02 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:00 2006