Locus 5039

Sequence ID 2R_DroMel_CAF1
Location 16,379,526 – 16,379,617
Length 91
Max. P 0.859517
window8057

overview

Window 7

Location 16,379,526 – 16,379,617
Length 91
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 74.77
Mean single sequence MFE -27.78
Consensus MFE -16.74
Energy contribution -18.13
Covariance contribution 1.39
Combinations/Pair 1.25
Mean z-score -1.65
Structure conservation index 0.60
SVM decision value 0.82
SVM RNA-class probability 0.859517
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16379526 91 + 20766785
GAUGAGGUUGCUCGGCCGGAAGGGCAGCGUGUCUCAUCCGAAAGAGCUGGAACUGAAAAUGGUUCGUAUACACGAGCCG------AUAAAAUGGAAC
((((((..((((.(.((....)).)))))...))))))(....)...............((((((((....))))))))------............ ( -29.90)
>DroSec_CAF1 49546 91 + 1
GAUGAGGUUGCUCGGCCGGAAGGGCAGCGUGUCUCAUCCGAAAGAGCUGGGACUGAAAAAGGUUCGUAUACACGAGCCA------AUAAAAUGGGAC
.........(((.(.((....)).))))..((((((.((....).).)))))).......(((((((....))))))).------............ ( -30.00)
>DroSim_CAF1 51321 91 + 1
GAUGAGGUUGCUCGGCCGGAAGGGCAGCGUGUCUCAUCCGAAAGAGCUGGGACUGAAAAAGGUUCGUAUACACGAGCCA------AUACAAUGGGAC
.........(((.(.((....)).))))..((((((.((....).).)))))).......(((((((....))))))).------............ ( -30.00)
>DroEre_CAF1 54899 91 + 1
GAUGAGGUUGCCCGGCCGGAAGGGCAGCGUGUCGCAUCGGAAAAAGCUGGGACUGAAAGAGGUUCGUAUACACGAGCAG------UAAAAAUGGAAC
......(((((((........)))))))..(((.((.(.......).)).)))........((((((....))))))..------............ ( -24.80)
>DroYak_CAF1 54102 76 + 1
GAUGAGGUUGCGCGGCCGGAAGGGCAGCGUGUCGCA---------------ACUGAAAAAGGUUCGUAUACACGAGCCG------AUAAAAUGGAUC
.....(((((((((.((....)).).....).))))---------------)))......(((((((....))))))).------............ ( -24.20)
>DroAna_CAF1 49041 89 + 1
---GGGACUGC-CAGCCGGAAGGGCAGUGCGAAUCAUCCGUUGGAGCCGUUACCAAAAAAGGUUUGUACGUUGGCACAGCUGUGGUCAGAAUA----
---..((((((-(((((....)....(((((((((.....((((........))))....)))))))))))))))((....))))))......---- ( -27.80)
>consensus
GAUGAGGUUGCUCGGCCGGAAGGGCAGCGUGUCUCAUCCGAAAGAGCUGGGACUGAAAAAGGUUCGUAUACACGAGCCG______AUAAAAUGGAAC
(((((((((((....((....)))))))....))))))......................(((((((....)))))))................... (-16.74 = -18.13 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:59 2006