Locus 5038

Sequence ID 2R_DroMel_CAF1
Location 16,377,208 – 16,377,318
Length 110
Max. P 0.644616
window8056

overview

Window 6

Location 16,377,208 – 16,377,318
Length 110
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 80.14
Mean single sequence MFE -23.09
Consensus MFE -9.90
Energy contribution -12.38
Covariance contribution 2.48
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.43
SVM decision value 0.23
SVM RNA-class probability 0.644616
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16377208 110 - 20766785
UCUGCCUCUUUU--------AAAUUGUUGCAGAUUUAAAAGCGAUAAUUUCCGAGUAAAAACCAUUAUCGACCUUUUCCAGGAGAAACUCCACAUAAAGGGUAUGGUAAACACAUCAA
..((((.(((((--------(((((......))))))))))(((((((...............)))))))(((((((...((((...))))....)))))))..)))).......... ( -22.56)
>DroSec_CAF1 47199 108 - 1
UUUGUCUUA--U--------UAAUUGUUUCUGAUAUAAAAGAGAUAAUUUCCGAGUAAUAACCAUUAACGACCUUUUCCAGGAGAAACUCCUCAUAAAGGGUAUGGUAAACACAUCAA
.(((.(((.--.--------.((((((((((........))))))))))...))))))..(((((.....(((((((..(((((...)))))...))))))))))))........... ( -23.80)
>DroSim_CAF1 49145 108 - 1
UUUGUCUCC--U--------UAAUUGUUGCUGAUAUAAAAGAGAUAAUUUCCGAGUAAUAACCAUUAACGACCUUUUCCAGGAGAAACUCCACAUAAAGGGUAUGGUAAACACAUCAA
.(((.(((.--.--------.((((((..((........))..))))))...))))))..(((((......(((((....((((...))))....)))))..)))))........... ( -19.90)
>DroEre_CAF1 52606 118 - 1
UUUGUCUCUUUUAUAUCUUUUCAUUGUUGAAGAUAUAAAAACGACGAGUUCCGAGUAAAAAGCAUUAACGACCUUUUCCAGGAGAAACUCCUCAUAGAGGGUAUGGUAAACAAAUCAA
.(((((..((((((((((((........))))))))))))..)))))((((((.((.....)).......(((((((..(((((...)))))...))))))).)))..)))....... ( -28.20)
>DroYak_CAF1 51638 96 - 1
UGGGACUCUU----------UCAUUGUUGCACAUAUAAAAACGACAGUUUCCGAGUAAAAACCAUUAACGACCUUUUCCAGGAGAAACUCCU------------GGCAAACAAACCAA
(((.((((..----------..(((((((............)))))))....)))).................(((.(((((((...)))))------------)).)))....))). ( -21.00)
>consensus
UUUGUCUCUU_U________UAAUUGUUGCAGAUAUAAAAGCGAUAAUUUCCGAGUAAAAACCAUUAACGACCUUUUCCAGGAGAAACUCCUCAUAAAGGGUAUGGUAAACACAUCAA
.....................(((((((((..........)))))))))...........(((((......(((((...(((((...)))))...)))))..)))))........... ( -9.90 = -12.38 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:58 2006