Locus 5037

Sequence ID 2R_DroMel_CAF1
Location 16,366,257 – 16,366,356
Length 99
Max. P 0.807306
window8054 window8055

overview

Window 4

Location 16,366,257 – 16,366,356
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 95.25
Mean single sequence MFE -24.43
Consensus MFE -24.77
Energy contribution -24.33
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.58
Structure conservation index 1.01
SVM decision value 0.64
SVM RNA-class probability 0.807306
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16366257 99 + 20766785
UUGGAUUUCGGGUAAACAAACUGUUUUAACUCAGGUAAAAAGUGUACUAAGAGUACGAUACGCGAAGCAGAGGUACCACAGAGCCUAGGAAAUCCACUG
.((((((((...........(((((((.((....))......(((((.....)))))......)))))))((((........))))..))))))))... ( -23.40)
>DroSec_CAF1 36134 97 + 1
UUGGAUUUCAGGUAAACAAACUGUUUUAACUCAGGUAAAAAGCGUACUAAGAGCACGAUACGCGAAACAGAGGUACC--GGAGCCUAGGAAAUCCACUG
.((((((((...........(((((((.((....)).....(((((............))))))))))))((((...--...))))..))))))))... ( -24.50)
>DroSim_CAF1 38294 97 + 1
UUGGAUUUCGGGUAAACAAACUGUUUUAACUCAGGUAAAAAGCGUACUAAGAGUACGAUACGCGAAACAGAGGUACC--GGAGCCUAGGAAAUCCACUG
.((((((((...........(((((((.((....))......(((((.....)))))......)))))))((((...--...))))..))))))))... ( -25.40)
>consensus
UUGGAUUUCGGGUAAACAAACUGUUUUAACUCAGGUAAAAAGCGUACUAAGAGUACGAUACGCGAAACAGAGGUACC__GGAGCCUAGGAAAUCCACUG
.((((((((...........(((((((.((....)).....(((((............))))))))))))((((.(....).))))..))))))))... (-24.77 = -24.33 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 16,366,257 – 16,366,356
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 95.25
Mean single sequence MFE -23.87
Consensus MFE -22.45
Energy contribution -22.23
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.85
Structure conservation index 0.94
SVM decision value 0.52
SVM RNA-class probability 0.766067
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16366257 99 - 20766785
CAGUGGAUUUCCUAGGCUCUGUGGUACCUCUGCUUCGCGUAUCGUACUCUUAGUACACUUUUUACCUGAGUUAAAACAGUUUGUUUACCCGAAAUCCAA
...((((((((.(((((.((((..((.((((((.....)))..((((.....))))...........))).))..))))...)))))...)))))))). ( -24.30)
>DroSec_CAF1 36134 97 - 1
CAGUGGAUUUCCUAGGCUCC--GGUACCUCUGUUUCGCGUAUCGUGCUCUUAGUACGCUUUUUACCUGAGUUAAAACAGUUUGUUUACCUGAAAUCCAA
...((((((((...(((((.--((((.....(.....)....(((((.....))))).....)))).))))).((((.....))))....)))))))). ( -23.50)
>DroSim_CAF1 38294 97 - 1
CAGUGGAUUUCCUAGGCUCC--GGUACCUCUGUUUCGCGUAUCGUACUCUUAGUACGCUUUUUACCUGAGUUAAAACAGUUUGUUUACCCGAAAUCCAA
...((((((((...(((((.--((((.....(.....)....(((((.....))))).....)))).))))).((((.....))))....)))))))). ( -23.80)
>consensus
CAGUGGAUUUCCUAGGCUCC__GGUACCUCUGUUUCGCGUAUCGUACUCUUAGUACGCUUUUUACCUGAGUUAAAACAGUUUGUUUACCCGAAAUCCAA
...((((((((...(((((...((((((........).)))))((((.....))))...........))))).((((.....))))....)))))))). (-22.45 = -22.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:57 2006