| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,363,338 – 16,363,445 |
| Length | 107 |
| Max. P | 0.516140 |
| Location | 16,363,338 – 16,363,445 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 83.90 |
| Mean single sequence MFE | -34.93 |
| Consensus MFE | -29.80 |
| Energy contribution | -29.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.85 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16363338 107 + 20766785 AUUGUCGCCGCUUUUUGAAUUGCAGCGCGGAGGCGCCUCUUUAUGCGGACAGCAGAGUCCAGAAUUCUAGAAGCGGGCCCAAAU-----------AGAUUAACUUUUUAUGACUUGAA ...(((.((((((((.((((((((....((((....))))...)))((((......))))..))))).))))))))......((-----------(((.......))))))))..... ( -32.70) >DroSec_CAF1 33159 118 + 1 GUUGUCGCCGCUUUUUGAAUUGCAGCGCGGAGGCGCCUCUUUAUGCGGACAGCAGAGUCCAGAAUUCUAGAAGCGGGCAAGCAUAGCUUUCUUAUAGAUAAGAAGCAAGUUUCUUAAA .((((..((((((((.((((((((....((((....))))...)))((((......))))..))))).)))))))))))).....((((.((((....))))))))............ ( -36.90) >DroSim_CAF1 35304 118 + 1 GUUGUCGCCGCUUUUUGAAUUGCAGCGCGGAGGCGCCUCUUUAUGCGGACAGCAGAGUCCAGAAUUCUAGAAGCGGGCAAGCAUAGCGUUCUUAUAGAUUAGCAGCAAGUUUCUUAAA (((((..((((((((.((((((((....((((....))))...)))((((......))))..))))).))))))))((.......))..............)))))............ ( -35.20) >consensus GUUGUCGCCGCUUUUUGAAUUGCAGCGCGGAGGCGCCUCUUUAUGCGGACAGCAGAGUCCAGAAUUCUAGAAGCGGGCAAGCAUAGC_UUCUUAUAGAUUAGCAGCAAGUUUCUUAAA .......((((((((.((((((((....((((....))))...)))((((......))))..))))).)))))))).......................................... (-29.80 = -29.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:56 2006