Locus 5035

Sequence ID 2R_DroMel_CAF1
Location 16,361,575 – 16,361,668
Length 93
Max. P 0.508512
window8052

overview

Window 2

Location 16,361,575 – 16,361,668
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.38
Mean single sequence MFE -24.55
Consensus MFE -17.72
Energy contribution -16.72
Covariance contribution -1.00
Combinations/Pair 1.26
Mean z-score -2.26
Structure conservation index 0.72
SVM decision value -0.05
SVM RNA-class probability 0.508512
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16361575 93 + 20766785
UGCUGUUUUG---GCCAGAGUAAUGACCGUUGGCCGCU-UUUGUGGUCGAUUUUCUGGUAAUUGAAGUUAUGAUUUAAUUUAAUUUACCGCAAAAGU
.........(---(((((.((....))..))))))(((-((((((((.((((.......(((((((.......))))))).)))).))))))))))) ( -25.40)
>DroPse_CAF1 62437 97 + 1
GUAUAUGUCGGGUGGCGGUGUAAUGACCGUUGGUCGCUAUUUGUGGUUAAUUUUCUGGUAAUUGAAAUUAUGAUUUAAUUUAAUUUGCCACAAAAGU
......(.(((.(((((((......))))))).))))..((((((((.((((.......(((((((.......))))))).)))).))))))))... ( -22.00)
>DroEre_CAF1 37159 92 + 1
-GCUCUUUUG---GCCAGAGUAAUGACCGUUGGUCGCU-UUUGUGGUCGAUUUUCUGGUAAUUGAAAUUAUGAUUUAAUUUAAUUUACCGCAAAAUG
-((....(((---((((.((...(((((...)))))..-.)).)))))))......(((((...((((((.....))))))...)))))))...... ( -24.70)
>DroYak_CAF1 35724 92 + 1
-GCUCUUUUG---GCCAGUGUAAUGACCGUUGGCCGCU-UUUGUGGUCGAUUUUCUGGUAAUUGAAAUUAUGAUUUAAUUUAAUUUACCGCAAAAGU
-...((((((---...........((..(((((((((.-...)))))))))..)).(((((...((((((.....))))))...))))).)))))). ( -25.70)
>DroAna_CAF1 30991 92 + 1
AGCCAG-AUA---GGCAGAGUAAUGACCGCUGGCCGCU-UUUGUGGUCAAUUUUCUUGUAAUUGAAAUUAUGAUUUAAUUUAAUUUGCCGCAAAAGA
.(((((-...---((((......)).)).)))))..((-(((((((((((((.......)))))((((((.....)))))).....)))))))))). ( -27.50)
>DroPer_CAF1 63305 97 + 1
GUAUAUGUCGGGUGGCGGUGUAAUGACCGUUGGUCGCUAUUUGUGGUUAAUUUUCUGGUAAUUGAAAUUAUGAUUUAAUUUAAUUUGCCACAAAAGU
......(.(((.(((((((......))))))).))))..((((((((.((((.......(((((((.......))))))).)))).))))))))... ( -22.00)
>consensus
_GCUAUUUUG___GCCAGAGUAAUGACCGUUGGCCGCU_UUUGUGGUCAAUUUUCUGGUAAUUGAAAUUAUGAUUUAAUUUAAUUUACCGCAAAAGU
........................((..(((((((((.....)))))))))..))((((((...((((((.....))))))...))))))....... (-17.72 = -16.72 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:54 2006