Locus 5034

Sequence ID 2R_DroMel_CAF1
Location 16,354,165 – 16,354,255
Length 90
Max. P 0.971050
window8051

overview

Window 1

Location 16,354,165 – 16,354,255
Length 90
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 72.05
Mean single sequence MFE -24.14
Consensus MFE -9.36
Energy contribution -11.20
Covariance contribution 1.84
Combinations/Pair 1.24
Mean z-score -2.18
Structure conservation index 0.39
SVM decision value 1.67
SVM RNA-class probability 0.971050
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16354165 90 - 20766785
----------GCGAGUGCAUUUAAGCAUCAGGUAAACAU----AGCA---------AAAAUGUACAUUGUAAUGUGUUGCGCAUUUUAUUUGCCUU-GUACAUUUGGCAAACAU-----
----------.(..((((......))))..)........----.((.---------.(((((((((..((((.(((.....))).....))))..)-)))))))).))......----- ( -19.00)
>DroSim_CAF1 26240 90 - 1
----------GCGAGUGCAUUUAAGCAUCAGGUAAACAU----AGCA---------AAAAUGUGCAUUGUAAUGUGUUGCGCAUUUUAUUUGCCUU-GUGCAUUUGGCAAACAU-----
----------((..((((......))))(((((..(((.----.(((---------((((((((((...........))))))))...)))))..)-))..)))))))......----- ( -24.00)
>DroEre_CAF1 29873 90 - 1
----------GCGAAUGCAUUUAACCAUCGGGUAAACAU----GGCA---------AAAAUGUGCAUUGUAAUAUGCAGCACAUUUUAUUUGCCUU-UUGCACUUGGCAAACAG-----
----------((.((((((....(((....)))......----((((---------(((((((((..(((.....))))))))))...))))))..-.)))).)).))......----- ( -25.00)
>DroYak_CAF1 28328 99 - 1
----------GCGAGUGCAUUUAAGCAUCAGGUAAACAU----GGCAAAAAUGGCAAAAAUGUGCACUGUAAUAUGCUGCGCAUUUUAUUUGCCAU-UUGCACUUGGCAAACAG-----
----------.(((((((......((....(.....)..----.))..(((((((((((((((((((........).))))))))...))))))))-)))))))))........----- ( -31.80)
>DroAna_CAF1 23416 109 - 1
AUUUUGUUAUGCAAUUGAAUUUGACCAACAGGUAAACAACAUGAACA---------CACAUAUGCAUUGCCAUAUUGUUCCUUUUGUGUUUACAUUUCUGCA-UUGGCAAAUACUUCUG
..(((((((((((.(((........)))...(((((((.((.(((((---------...(((((......))))))))))....))))))))).....))))-.)))))))........ ( -20.90)
>consensus
__________GCGAGUGCAUUUAAGCAUCAGGUAAACAU____AGCA_________AAAAUGUGCAUUGUAAUAUGCUGCGCAUUUUAUUUGCCUU_GUGCACUUGGCAAACAG_____
...........((((((((..........(((((((....................((((((((((...........)))))))))).)))))))...))))))))............. ( -9.36 = -11.20 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:54 2006