Locus 5032

Sequence ID 2R_DroMel_CAF1
Location 16,342,709 – 16,342,806
Length 97
Max. P 0.617191
window8048

overview

Window 8

Location 16,342,709 – 16,342,806
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 88.21
Mean single sequence MFE -25.98
Consensus MFE -20.55
Energy contribution -21.30
Covariance contribution 0.75
Combinations/Pair 1.20
Mean z-score -1.52
Structure conservation index 0.79
SVM decision value 0.17
SVM RNA-class probability 0.617191
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16342709 97 - 20766785
GAUGGGGAAUGA-AUGAGCUGGGGGUGCUGGUGACUAAGCCCCCAGCAUUGGAUAACGCUAAUUGGGUUGGGUAAAGAAAUGUGUGCACACAGAUGUG
............-....(((((((((...(....)...))))))))).(((..((((.(.....).))))..))).....((((....))))...... ( -31.30)
>DroSec_CAF1 12755 97 - 1
GAUGGUGAAUGA-AUGAGCUGGGGGUGCUGGUGACUAAGCCUCCAGCUUUGGAUAACGUUAAUUGGGUUGGGUAAAGAAAUAUGUGCACACAGAUGUG
..(((((.(((.-..(((((((((((...(....)...)))))))))))((..((((.(.....).))))..))......)))...))).))...... ( -26.80)
>DroSim_CAF1 14132 97 - 1
GAUGGUGAAUGA-AUGAGCUGGGGGUGCUGGUGACUAAGCCUCCAGCUUUGGAUAACGUUAAUUGGGUUGGGUAAAGAAAAGUGUGCACACAGAUGUG
..(((((.....-..(((((((((((...(....)...)))))))))))((..((((.(.....).))))..))............))).))...... ( -26.60)
>DroYak_CAF1 16672 98 - 1
GAUGGUGAAUGAAACGAGCUGCGGGUGCUGGUGACUAAUCCUCCGAGUUGGGAUAGCAUUAAUUGGGUUGAGUAAAGAACUGUUUAUACACAGAUGAA
....(((.(((((.(((.(((..(((((((....)..(((((.......)))))))))))...))).)))(((.....))).))))).)))....... ( -19.20)
>consensus
GAUGGUGAAUGA_AUGAGCUGGGGGUGCUGGUGACUAAGCCUCCAGCUUUGGAUAACGUUAAUUGGGUUGGGUAAAGAAAUGUGUGCACACAGAUGUG
....(((........(((((((((((...(....)...)))))))))))....((((.(.....).))))..................)))....... (-20.55 = -21.30 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:51 2006