Locus 5030

Sequence ID 2R_DroMel_CAF1
Location 16,334,053 – 16,334,143
Length 90
Max. P 0.523590
window8045

overview

Window 5

Location 16,334,053 – 16,334,143
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 72.73
Mean single sequence MFE -18.94
Consensus MFE -11.90
Energy contribution -12.73
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.523590
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16334053 90 + 20766785
UUAUGCAUGAGUGGGAAAGUUUAUUUUUCAGUUAUGCAU--------GCCCAGUGAACUCUGACCU---ACC--UCACACCCACCUCCACCUCCA-CCAACGCC-----
.(((((((((.((..(((.....)))..)).))))))))--------)....((((..........---...--)))).................-........----- ( -18.92)
>DroSec_CAF1 4192 82 + 1
UUAUGCAUGAGUGGGAAAGUUUAUUUUUCAGUUAUGCAU--------GCCCAGUGAACUCUGACCU---ACC--UCACACCCCGCACCCC---------UCGCC-----
.(((((((((.((..(((.....)))..)).))))))))--------)....((((..........---...--)))).....((.....---------..)).----- ( -19.02)
>DroSim_CAF1 5518 82 + 1
UUAUGCAUGAGUGGGAAAGUUUAUUUUUCAGUUAUGCAU--------GCCCAGUGAACUCUGACCU---ACC--UCACACCCCGCAUCAC---------UCACC-----
.(((((((((.((..(((.....)))..)).))))))))--------)....((((..........---...--))))............---------.....----- ( -18.92)
>DroEre_CAF1 7073 93 + 1
UUAUGCAUGAGUGGGAAAGUUUAUUUUUCAGUUAUGCAU--------GCCCGCUGAACUCUGACCUCUGAGCUCUGACCCCCCUCACCCC---GAUGCAGUGCC-----
.(((((((((.((..(((.....)))..)).))))))))--------)..(((((..(((........)))...(((......)))....---....)))))..----- ( -23.30)
>DroYak_CAF1 7484 99 + 1
UUAUGCAUGAGUGGGAAAGUUUAUUUUUCAGUUAUGCAUGCAGUUAUGCCCACUGAACUCUGACCCC-------UGACCUCCCUCACUUC---GAUGCGAUGCCAUGGC
...((((((((((((..((.......((((((...(((((....)))))..)))))).((.......-------.)).))..))))))).---.)))))..((....)) ( -21.80)
>DroAna_CAF1 3864 71 + 1
UUAUGCAUGAGUGGGACAGUUUAUUUUUCCGUUUUACAC--------GCCCACUGAACCCUGACCUC-------UCGCACCUGCCC-----------------------
...(((.(.((((((...((.((...........)).))--------.)))))).).....((....-------))))).......----------------------- ( -11.70)
>consensus
UUAUGCAUGAGUGGGAAAGUUUAUUUUUCAGUUAUGCAU________GCCCACUGAACUCUGACCU___ACC__UCACACCCCCCACCAC_________ACGCC_____
..((((((((.((..(((.....)))..)).))))))))...................................................................... (-11.90 = -12.73 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:48 2006