Locus 5029

Sequence ID 2R_DroMel_CAF1
Location 16,332,807 – 16,332,923
Length 116
Max. P 0.617085
window8044

overview

Window 4

Location 16,332,807 – 16,332,923
Length 116
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 85.90
Mean single sequence MFE -40.40
Consensus MFE -29.90
Energy contribution -29.14
Covariance contribution -0.76
Combinations/Pair 1.21
Mean z-score -1.67
Structure conservation index 0.74
SVM decision value 0.17
SVM RNA-class probability 0.617085
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16332807 116 - 20766785
CUGGCACAAGCACGAUAGCCCCGGCAGUCUGCGCAGUCAGGUGAG--CAUAUCGAUGGUAUCCCAUUUGAUACCCCGAACCGACUGGGGCAUUUCAAUUUGGCCAGCAGUCGCUCUAA
(((((....(((.(((.((....)).))))))...)))))..(((--(...(((..((((((......)))))).)))...(((((.(((...........)))..)))))))))... ( -42.00)
>DroSec_CAF1 2972 107 - 1
CUGGCACAAGCACGAUAGCCCCGGCAGUCUGCGCAGUCAGGUGAGCGCAUAUCGAUGGUAUCCCAUUUGAUACCACGAGCCCACUGGGGCAUUUCAAUUUGGCCAGC-----------
(((((.((((...((..((((((((....(((((..((....)))))))..(((.(((((((......)))))))))))))....)))))...))..))))))))).----------- ( -43.60)
>DroSim_CAF1 3692 107 - 1
CUGGCACAAGCACGAUAGCCCCGGCAGUCUGCGCAGUCAGGUGAGCGCAUAUCGAUGGUAUCCCAUUUGAUACCCCGAGCCCACUGGGGCAUUUCAAUUUGGCCAGC-----------
(((((.((((...((..((((((((....(((((..((....)))))))..(((..((((((......)))))).))))))....)))))...))..))))))))).----------- ( -40.90)
>DroEre_CAF1 6013 116 - 1
CUGGCACAAGCACGAUAGCCCCGGCAGUCUGCGCAGUCAGGUGAG--CAUGUCGAUGGUACGCCAUUUGAUACCCUGAGCCCACUGGGCCAUUUCAAUUUGGCUAGUAGUCGGUCUUA
(((((((..(((.(((.((....)).)))))).((((..(((.((--..(((((((((....))).))))))..))..))).))))(((((........))))).)).)))))..... ( -37.30)
>DroYak_CAF1 6211 116 - 1
CUGGCACAAGCACGACAGUCCCGGCAGUUUGCGCAGUCAGGUAAG--CAUAUCGAUGGUGCCCCAUUUGAUAUCCCCAGCCCAUUGGGGCAUUUCAAUUUGGCUACCAGUCGGUCCUA
...((....)).....((..(((((.((((((........)))))--).......(((((((....((((.((((((((....)))))).)).))))...))).)))))))))..)). ( -38.20)
>consensus
CUGGCACAAGCACGAUAGCCCCGGCAGUCUGCGCAGUCAGGUGAG__CAUAUCGAUGGUAUCCCAUUUGAUACCCCGAGCCCACUGGGGCAUUUCAAUUUGGCCAGCAGUCG_UC__A
(((((.((((...((..(((((((..(.((....)).).(((..(....(((((((((....))).))))))...)..)))..)))))))...))..)))))))))............ (-29.90 = -29.14 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:47 2006