Locus 5028

Sequence ID 2R_DroMel_CAF1
Location 16,330,226 – 16,330,331
Length 105
Max. P 0.877557
window8043

overview

Window 3

Location 16,330,226 – 16,330,331
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 95.30
Mean single sequence MFE -24.68
Consensus MFE -23.03
Energy contribution -22.83
Covariance contribution -0.19
Combinations/Pair 1.09
Mean z-score -1.20
Structure conservation index 0.93
SVM decision value 0.90
SVM RNA-class probability 0.877557
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16330226 105 - 20766785
GGAUGCUGCACAACAUGUCGCUGAACAAGAAGUGCCACAGCCACUUGGCCAACGGCGUCAUCAUAAAUUUCAUCACGUCCGUGUACCAAACGGAAUUCUACCAAA
.((((((((((..(.(((......))).)..))))....(((....)))....))))))..................(((((.......)))))........... ( -24.50)
>DroGri_CAF1 447 105 - 1
GGAUGCUGCAGAACAUGUCGCUGAACAAGAAGUGCCAUAGCCACUUGGCCAAUGGCAUCAUCAUAAAUUUCAUCACGUCCGUUUACCAAACGGAAUUCUACAGGA
.....(((.((((..(((.(.((((...((.(((((((.(((....)))..)))))))..))......)))).))))((((((.....)))))).)))).))).. ( -26.30)
>DroEre_CAF1 3476 105 - 1
GGAUGCUGCACAACAUGUCGCUGAACAAGAAGUGCCACAGCCACUUGGCCAACGGCGUCAUCAUAAAUUUCAUCACGUCCGUGUACCAAACGGAAUUCUACCAAA
.((((((((((..(.(((......))).)..))))....(((....)))....))))))..................(((((.......)))))........... ( -24.50)
>DroWil_CAF1 40911 105 - 1
GGAUGCUGUACAACAUGUCGCUGAACAAGAAGUGCCACAGCCACUUGGCCAAUGGCAUCAUCAUAAAUUUCAUCACGUCCGUUUACCAAACGGAAUUCUACAAGA
.((((((((......((.((((........)))).))..(((....)))..))))))))..................((((((.....))))))........... ( -23.90)
>DroMoj_CAF1 22838 105 - 1
GGAUGCUGCACAACAUGUCGCUGAACAAGAAGUGCCACAGCCACUUGGCCAAUGGCAUCAUCAUAAAUUUCAUCACGUCCGUUUACCAAACGGAAUUCUACAAGU
.((((((((((..(.(((......))).)..))))....(((....)))....))))))..................((((((.....))))))........... ( -24.90)
>DroAna_CAF1 411 105 - 1
GGAUGCUGCACAACAUGUCGCUGAACAAGAAGUGCCACAGCCACUUGGCCAACGGCAUCAUCAUAAAUUUCAUCACGUCCGUAUACCAAACGGAAUUUUACAAGA
.((((((((((..(.(((......))).)..))))....(((....)))....))))))..................(((((.......)))))........... ( -24.00)
>consensus
GGAUGCUGCACAACAUGUCGCUGAACAAGAAGUGCCACAGCCACUUGGCCAACGGCAUCAUCAUAAAUUUCAUCACGUCCGUUUACCAAACGGAAUUCUACAAGA
.((((((((((..(.(((......))).)..))))....(((....)))....))))))..................(((((.......)))))........... (-23.03 = -22.83 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:46 2006