| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,329,361 – 16,329,469 |
| Length | 108 |
| Max. P | 0.664191 |
| Location | 16,329,361 – 16,329,469 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.38 |
| Mean single sequence MFE | -29.88 |
| Consensus MFE | -11.44 |
| Energy contribution | -11.16 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16329361 108 - 20766785 ----UCGCUCCCUUAGUCGCU--UAUCCUUGCUGUA--UCCUUG-CUGCUGGAUGUAAACGAAGUAAUUUUUAUAUUUCCACUCAGGCAAA---CAAAACAAACGGAGAGGCGGAGCGAG ----((((((((((..(((..--(((((..((.(((--....))-).)).))))).....((((((.......))))))............---.........)))..))).))))))). ( -29.20) >DroGri_CAF1 39304 107 - 1 ----CUGCUUACU-------UCC--UGCUAUCUGUUUUCCUUUGCUUGUCAAAUGUAAACGAAGUAAUUUUUAUAUUUUCGACCAAGCAAAAGACCAACAAAAUAGAAAAGAAGAAGAAG ----...(((.((-------((.--..((((.((((.((.((((((((((((((((((..(((....)))))))))))..)).)))))))).))..))))..))))....)))))))... ( -23.00) >DroSec_CAF1 32443 108 - 1 ----UCGCUCCCCAAGUCGUU--UAUCCUUGCUGUA--UCCUUG-CUGCUGGAUGUAAACGAAGUAAUUUUUAUAUUUCCACUCAGGCAAA---CAAAACAAACGGAGAGGCGGAGCGAG ----(((((((((...(((((--(((((..((.(((--....))-).)).)))..))))))).............(((((...........---..........))))))).))))))). ( -32.10) >DroSim_CAF1 33489 108 - 1 ----UCGCUCCCCAAGUCGCU--UAUCCUUGCUGUA--UCCUUG-CUGCUGGAUGUAAACGAAGUAAUUUUUAUAUUUCCACUCAGGCAAA---CAAAACAAACGGAGAGGCGGAGCGAG ----(((((((((...(((..--(((((..((.(((--....))-).)).)))))....))).............(((((...........---..........))))))).))))))). ( -29.70) >DroAna_CAF1 32992 115 - 1 GCUUUCGCUCUCGCACUCGAUCCUGGCCCCGUUUUA--UCCUUGUCUGGUGGAUGUAAACGAAGUAAUUUUUAUAUUUCCACCCAGGCAAA---CAAGACAGGACGAAGGCAGGAGACCA .......(((..((..(((.(((((....)(((((.--...((((((((((((.(((.(.(((....))).).))).)))).)))))))).---.))))))))))))..))..))).... ( -35.40) >consensus ____UCGCUCCCCAAGUCGCU__UAUCCUUGCUGUA__UCCUUG_CUGCUGGAUGUAAACGAAGUAAUUUUUAUAUUUCCACUCAGGCAAA___CAAAACAAACGGAGAGGCGGAGCGAG ....(((((((...............(((..((((......(((.(((.((((.(((.(.(((....))).).))).))))..))).)))............))))..))).))))))). (-11.44 = -11.16 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:43 2006