Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,326,953 – 16,327,073 |
Length | 120 |
Max. P | 0.701772 |
Location | 16,326,953 – 16,327,073 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.36 |
Mean single sequence MFE | -30.51 |
Consensus MFE | -25.65 |
Energy contribution | -25.77 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.71 |
Structure conservation index | 0.84 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16326953 120 + 20766785 UAGCGAGCACAUUUCAAAAACAUAAACGCACAAAAUGUGUCAACCGGAAUAUGCUCGCUGUGUAAACAGGGCCGAGGCGGCCACAUGCGGAAAUCACUAAAGGCACUUCCUGCACCACCA .((((((((.(((((....(((((...........))))).....))))).))))))))(((((..((.(((((...)))))...)).((((....(....)....)))))))))..... ( -33.40) >DroSec_CAF1 30128 117 + 1 UAGCGAGCACAUUUCAAAAACAUAAACGCACAAAAUGUGUCAACCGCAAUAUGCUCGCUGUGUAAACAGGGCCGAGGCGGCCACAUGCGGAAAUCACUAAAGGCACUUCCUGCAC---CA (((.((((((((((..................))))))))...(((((.........((((....))))(((((...)))))...)))))...)).)))...(((.....)))..---.. ( -29.97) >DroSim_CAF1 30612 117 + 1 UAGCGAGCACAUUUCAAAAACAUAAACGCACAAAAUGUGUCAACCGCAAUAUGCUCGCUGUGUAAACAGGGCCGAGGCGGCCACAUGCGGAAAUCACUAAAGGCACUUCCUGCAC---CA (((.((((((((((..................))))))))...(((((.........((((....))))(((((...)))))...)))))...)).)))...(((.....)))..---.. ( -29.97) >DroAna_CAF1 30880 117 + 1 AAGCGAACACAUUUCAAAAGCAUAAACGCACAAAAUGUGUCAACCGCAAUAUGCUCGCUGUGUAAACAGGACCGAGUUGGCCGCAUGCGGAAAUCACUAAAGGCACUUCCUGCAC---CA .(((((((((((((.....((......))...)))))))).....((.....)))))))(((((...((..((.(((.(.(((....)))...).)))...))..))...)))))---.. ( -28.70) >consensus UAGCGAGCACAUUUCAAAAACAUAAACGCACAAAAUGUGUCAACCGCAAUAUGCUCGCUGUGUAAACAGGGCCGAGGCGGCCACAUGCGGAAAUCACUAAAGGCACUUCCUGCAC___CA ..((((((((((((..................))))))))...(((((.........((((....))))(((((...)))))...)))))...)).....(((.....)))))....... (-25.65 = -25.77 + 0.12)
Location | 16,326,953 – 16,327,073 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.36 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -36.00 |
Energy contribution | -35.75 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.08 |
Mean z-score | -1.55 |
Structure conservation index | 0.94 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16326953 120 - 20766785 UGGUGGUGCAGGAAGUGCCUUUAGUGAUUUCCGCAUGUGGCCGCCUCGGCCCUGUUUACACAGCGAGCAUAUUCCGGUUGACACAUUUUGUGCGUUUAUGUUUUUGAAAUGUGCUCGCUA ..(((((((.((((((..(....)..))))))))))..(((((...))))).......)))((((((((((((.(((..(((.(((...))).))).......))).)))))))))))). ( -40.60) >DroSec_CAF1 30128 117 - 1 UG---GUGCAGGAAGUGCCUUUAGUGAUUUCCGCAUGUGGCCGCCUCGGCCCUGUUUACACAGCGAGCAUAUUGCGGUUGACACAUUUUGUGCGUUUAUGUUUUUGAAAUGUGCUCGCUA ..---((((.((((((..(....)..))))))))))..(((((...)))))..........(((((((((((((((...(((.(((...))).)))..)))......)))))))))))). ( -38.10) >DroSim_CAF1 30612 117 - 1 UG---GUGCAGGAAGUGCCUUUAGUGAUUUCCGCAUGUGGCCGCCUCGGCCCUGUUUACACAGCGAGCAUAUUGCGGUUGACACAUUUUGUGCGUUUAUGUUUUUGAAAUGUGCUCGCUA ..---((((.((((((..(....)..))))))))))..(((((...)))))..........(((((((((((((((...(((.(((...))).)))..)))......)))))))))))). ( -38.10) >DroAna_CAF1 30880 117 - 1 UG---GUGCAGGAAGUGCCUUUAGUGAUUUCCGCAUGCGGCCAACUCGGUCCUGUUUACACAGCGAGCAUAUUGCGGUUGACACAUUUUGUGCGUUUAUGCUUUUGAAAUGUGUUCGCUU .(---(..(.....)..))...(((((...((((((((((((.....))))((((....))))...)))...)))))...((((((((((.(((....)))...))))))))))))))). ( -35.60) >consensus UG___GUGCAGGAAGUGCCUUUAGUGAUUUCCGCAUGUGGCCGCCUCGGCCCUGUUUACACAGCGAGCAUAUUGCGGUUGACACAUUUUGUGCGUUUAUGUUUUUGAAAUGUGCUCGCUA .....((((.((((((..(....)..))))))))))..((((.....))))..........(((((((((((((((...(((.(((...))).)))..)))......)))))))))))). (-36.00 = -35.75 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:42 2006