| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,326,661 – 16,326,764 |
| Length | 103 |
| Max. P | 0.958847 |
| Location | 16,326,661 – 16,326,764 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.38 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -22.36 |
| Energy contribution | -21.80 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.74 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16326661 103 - 20766785 UGAAGCGUAAACAAACGAUUUCUGACAAA------AAA----------AAAAAGAGAAAAGGAAGAACUGUGGGCUAAAUUGUUUGCGGGCAGGCACUUCCUGCAAAUAGAUAGUUGUA ..............((((((((((.....------...----------...................(((..(((......)))..)))(((((.....)))))...)))).)))))). ( -22.30) >DroSec_CAF1 29841 99 - 1 UGAAGCAUAAACAAACGAUUUCUGACAAA------AA--------------AACAGAAAAGGAGAAACUGUGGGCUAAAUUGUUUGCGGGCAGGCACUUCCUGCAAAUAGAUAGUUGUA ..............((((((((((.....------..--------------................(((..(((......)))..)))(((((.....)))))...)))).)))))). ( -22.30) >DroSim_CAF1 30325 99 - 1 UGAAGCGUAAACAAACGAUUUCUGACAAA------AA--------------AACAGAAAAGGAGAAACUGUGGGCUAAAUUGUUUGCGGGCAGGCACUUCCUGCAAAUAGAUAGUUGUA ..............((((((((((.....------..--------------................(((..(((......)))..)))(((((.....)))))...)))).)))))). ( -22.30) >DroEre_CAF1 29041 119 - 1 UGAAGCGUAAACAAACGAUUUCUGACAAAAACCAAAAAACACAAAACAAAAAACACAAAAGGAAAAGUUGCGGGCUAAAUUGUUUGCGGGCGGGCACUUCCUGCAAAUAGAUAGUUGUA ..............((((((((((.......((..................(((............)))((((((......))))))))(((((.....)))))...)))).)))))). ( -20.30) >DroYak_CAF1 30225 106 - 1 ---AGCGUAAACAAACGAUUUCUGACAAA------AAAACAC----CGAAAGAUACAAAAGGAAAAACUGCGGGCUAAAUUGUUUGCGGGCAGGCACUUCCUGCAAAUAGAUAGUUGUA ---...........((((((((((.....------.......----(....)...............((((((((......))))))))(((((.....)))))...)))).)))))). ( -24.30) >consensus UGAAGCGUAAACAAACGAUUUCUGACAAA______AAA__________AAAAACAGAAAAGGAAAAACUGUGGGCUAAAUUGUUUGCGGGCAGGCACUUCCUGCAAAUAGAUAGUUGUA ..............((((((((((...........................................((((..((......))..))))(((((.....)))))...)))).)))))). (-22.36 = -21.80 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:40 2006