Locus 5021

Sequence ID 2R_DroMel_CAF1
Location 16,324,471 – 16,324,580
Length 109
Max. P 0.923056
window8029

overview

Window 9

Location 16,324,471 – 16,324,580
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.32
Mean single sequence MFE -38.28
Consensus MFE -31.76
Energy contribution -32.23
Covariance contribution 0.48
Combinations/Pair 1.25
Mean z-score -2.62
Structure conservation index 0.83
SVM decision value 1.15
SVM RNA-class probability 0.923056
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16324471 109 - 20766785
--------CCAGUGUCCUGCAUCCGAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAAGAGUUUGGGCAGCGGGAGUGGGGUACUCA---AAUGGCAAGUGCUAGCAAAAU
--------(((...((((((.((((((.(((.((((((((.(((......))).))))))))..)))...))))))..)))))).)))((((((..---.......))))))........ ( -35.60)
>DroSec_CAF1 27636 109 - 1
--------CCAGUGUCCUGCAUCCGAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAAGAGAUUGGGCAGCGGGAGCGGGGCACUCC---AAUGGCAAGUGCUAGCAAAAU
--------..((((((((((..(((.......((((((((.(((......))).))))))))(((.........)))..)))..))))))))))..---..((((....))))....... ( -42.00)
>DroSim_CAF1 28111 109 - 1
--------CCAGUGUCCUGCAUCCGAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAAGAGAUUGGGCAGCGGGAGCGGGGCACUCA---AAUGGCAAGUGCUAGCAAAAU
--------..((((((((((..(((.......((((((((.(((......))).))))))))(((.........)))..)))..))))))))))..---..((((....))))....... ( -42.00)
>DroEre_CAF1 26863 109 - 1
--------CCAGUGUCCUGCAUCCGAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAAGAGAUUGGGCAACGGGAGCGGGAUGCUCA---AUUGGCAAGUGAUAGCAAAAU
--------..((((((((((..(((.......((((((((.(((......))).))))))))(((.........)))..)))..))))))))))..---....((........))..... ( -37.70)
>DroYak_CAF1 27904 109 - 1
--------CCAGUGUCCUGCAUCCGAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAAGAGAUUGGCCAACGGGAGCGGGGUGCUCA---AAUGGCAAGUGCUGGCAAAAU
--------((((..((((((..(((........(((((((.(((......))).)))))))((((((....))))))..)))..))))).((((..---...)))).)..))))...... ( -42.70)
>DroAna_CAF1 28308 116 - 1
UCUGCUGUGCAGUGUCCUGUUUCAAAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAGCAUCAGGACGAACUGGGGAUGGGCUUGUAAAUAAUUGCAAAUACUAACA----
(((.(.((....(((((((..(((.....)))((((((((.(((......))).))))))))........))))))).)).).)))(((..((((((....))))))...)))...---- ( -29.70)
>consensus
________CCAGUGUCCUGCAUCCGAAAUUGACACAUUGAGCGAUGAGGUUUGGUUAAUGUGGCCAAGAGAUUGGGCAACGGGAGCGGGGCACUCA___AAUGGCAAGUGCUAGCAAAAU
..........((((((((((..(((.......((((((((.(((......))).)))))))).((((....))))....)))..)))))))))).......((((....))))....... (-31.76 = -32.23 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:33 2006