Locus 5020

Sequence ID 2R_DroMel_CAF1
Location 16,323,968 – 16,324,063
Length 95
Max. P 0.896390
window8028

overview

Window 8

Location 16,323,968 – 16,324,063
Length 95
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.63
Mean single sequence MFE -25.10
Consensus MFE -18.58
Energy contribution -18.86
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.85
Structure conservation index 0.74
SVM decision value 0.99
SVM RNA-class probability 0.896390
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16323968 95 + 20766785
-CACC----------CCUCUGACAUUGUGGCUAUGCCAAUGGC------AAUGGCAGCCACAAAAUAUUUGCGCUAAUUGAGAUAAAAUACAAUUUAAUGGGUGUGCAAACG---
-((((----------(........((((((((..((((.....------..))))))))))))..(((((...((.....))...))))).........)))))........--- ( -25.40)
>DroSec_CAF1 27210 95 + 1
-UGCC----------CCACUGACAUUGUGGCAAUGCCAAUGGC------AAUGGCAGCCGCAAAAUAUUUGCGCUAAUUGAGAUAAAAUACAAUUUAAUGGGUGUGCAAACG---
-((((----------(((.(((..(((((((..(((((.....------..))))))))))))..(((((...((.....))...)))))....))).))))...)))....--- ( -24.80)
>DroSim_CAF1 27646 95 + 1
-UAGC----------CCACUGACAUUGUGGCAAUGCCAAUGGC------AAUGGCAGCCGCAAAAUAUUUGCGCUAAUUGAGAUAAAAUACAAUUUAAUGGGUGUGCAAACG---
-..((----------(((.(((..(((((((..(((((.....------..))))))))))))..(((((...((.....))...)))))....))).))))).........--- ( -25.20)
>DroEre_CAF1 26404 94 + 1
----C--------------UGACACUGCGGCAAUGCCAAUGGCAAUGGCAAUGGCAGCCGCAAAAUAUUUGCGCUAAUUGAGAUAAAAUACAAUUUAAUGGGUGUGCAAAUG---
----.--------------......((((((..(((((...((....))..)))))))))))...(((((((((..((((((...........))))))....)))))))))--- ( -29.20)
>DroYak_CAF1 27465 89 + 1
----C----------CUACUAACACUGUGGCAAUGCCAA------------UGGCAGCCGCAAAAUAUUUGCGCUAAUUGAGAUAAAAUACAAUUUAAUGGGUGUGCAAAUGGAA
----.----------..........((((((..((((..------------.))))))))))...(((((((((..((((((...........))))))....)))))))))... ( -23.00)
>DroAna_CAF1 27887 104 + 1
CUGGCAAUGGCAGUGGCACUGAC--UGUUGCAAUGUCUACGGU------CGUGGCAGCCGCAAAAUAUUUACGCUAAUUGAGAUAGAAUACAAUCUAAUGGGCAUUCAAAAC---
...((((((((((.....))).)--))))))((((((((....------.((((...))))......................((((......)))).))))))))......--- ( -23.00)
>consensus
_U__C__________CCACUGACAUUGUGGCAAUGCCAAUGGC______AAUGGCAGCCGCAAAAUAUUUGCGCUAAUUGAGAUAAAAUACAAUUUAAUGGGUGUGCAAACG___
.........................((((((..(((((.............))))))))))).....(((((((......((((........)))).......)))))))..... (-18.58 = -18.86 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:32 2006