Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,742,129 – 2,742,231 |
Length | 102 |
Max. P | 0.975797 |
Location | 2,742,129 – 2,742,231 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.34 |
Mean single sequence MFE | -42.77 |
Consensus MFE | -38.57 |
Energy contribution | -38.57 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.47 |
Structure conservation index | 0.90 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2742129 102 + 20766785 CUUCUGUGGCUCCUGC------UCCUCCAGCUGCAGCUACAGCUGCAGUGCUGGCCGGGAGUCCUGGAAGAUGCUUGCCGUAGACCUUGUUGUUUGCACCUUUGCUUU ((((((.((((((((.------.((....((((((((....))))))))...)).)))))))).))))))..((..(..((((((......))))))..)...))... ( -41.00) >DroSec_CAF1 26332 108 + 1 CUUCUGUGGCUCCUGCUCCAGCUCCUCCAGCUGCAGCUACAGCUGCAGUGCUGGCCGGGAGUCCUGGAAGGUACUUGCUGUAGACCUUGUUGUUUGCACCUUUGCUUU ((((((.((((((((..(((((.......((((((((....))))))))))))).)))))))).))))))(((...(.(((((((......))))))).)..)))... ( -46.51) >DroSim_CAF1 12769 102 + 1 CUUCUGUGGCUCCUGC------UCCUCCAGCUGCAGCUACAGCUGCAGUGCUGGCCGGGAGUCCUGGAAGAUACUUGCCGUAGACCUUGUUGUUUGCACCUUUGCUUU ((((((.((((((((.------.((....((((((((....))))))))...)).)))))))).)))))).........((((((......))))))........... ( -40.80) >consensus CUUCUGUGGCUCCUGC______UCCUCCAGCUGCAGCUACAGCUGCAGUGCUGGCCGGGAGUCCUGGAAGAUACUUGCCGUAGACCUUGUUGUUUGCACCUUUGCUUU ((((((.((((((((...........(((((((((((....))))))..))))).)))))))).)))))).........((((((......))))))........... (-38.57 = -38.57 + 0.00)
Location | 2,742,129 – 2,742,231 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.34 |
Mean single sequence MFE | -35.87 |
Consensus MFE | -30.77 |
Energy contribution | -30.33 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.14 |
Structure conservation index | 0.86 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2742129 102 - 20766785 AAAGCAAAGGUGCAAACAACAAGGUCUACGGCAAGCAUCUUCCAGGACUCCCGGCCAGCACUGCAGCUGUAGCUGCAGCUGGAGGA------GCAGGAGCCACAGAAG ...((..((((((...(.....)((.....))..))))))(((..(.((((...(((((..((((((....))))))))))).)))------)).)))))........ ( -34.60) >DroSec_CAF1 26332 108 - 1 AAAGCAAAGGUGCAAACAACAAGGUCUACAGCAAGUACCUUCCAGGACUCCCGGCCAGCACUGCAGCUGUAGCUGCAGCUGGAGGAGCUGGAGCAGGAGCCACAGAAG ...(((....))).......(((((((......)).)))))...((.((((.(.(((((.((.(((((((....))))))).))..)))))..).))))))....... ( -40.10) >DroSim_CAF1 12769 102 - 1 AAAGCAAAGGUGCAAACAACAAGGUCUACGGCAAGUAUCUUCCAGGACUCCCGGCCAGCACUGCAGCUGUAGCUGCAGCUGGAGGA------GCAGGAGCCACAGAAG ...(((....)))...........(((..(((........(((..(.((((...(((((..((((((....))))))))))).)))------)).))))))..))).. ( -32.90) >consensus AAAGCAAAGGUGCAAACAACAAGGUCUACGGCAAGUAUCUUCCAGGACUCCCGGCCAGCACUGCAGCUGUAGCUGCAGCUGGAGGA______GCAGGAGCCACAGAAG ......(((((((...(.....)((.....))..)))))))...((.(((((..(((((..((((((....)))))))))))..)..........))))))....... (-30.77 = -30.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:20 2006