Locus 5019

Sequence ID 2R_DroMel_CAF1
Location 16,322,558 – 16,322,659
Length 101
Max. P 0.518953
window8027

overview

Window 7

Location 16,322,558 – 16,322,659
Length 101
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -30.10
Consensus MFE -19.14
Energy contribution -18.70
Covariance contribution -0.44
Combinations/Pair 1.19
Mean z-score -1.58
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.518953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16322558 101 - 20766785
UCUAAUCCAUGUUUGUGUUGAAAGAUUACCAAACUGAGA-AGUUACACAAAG-------C-----CACCGCCCACACAG-----GCCAACACUUUGUGUGUCUGUCUGCGAGUGGAAAG
.....((((((((((.(((....)))...)))))..(((-((.(((((((((-------.-----....(((......)-----)).....))))))))).)).)))....)))))... ( -26.70)
>DroSec_CAF1 25814 108 - 1
UCUAAUCCAUGUUUGUGUUGAAAGAUUACCAAACUGAGA-AGUUACACAAAGCUUUCGGC-----CACCGCCCACACAG-----ACAAACACUUUGUGUGUCUGUCUGCGAGUGGAAAG
.....(((((...((((..(((((.......((((....-))))........)))))(((-----....)))))))(((-----(((.((((.....)))).))))))...)))))... ( -30.66)
>DroSim_CAF1 26235 108 - 1
UCUAAUCCAUGUUUGUGUUGAAAGAUUACCAAACUGAGA-AGUUACACAAAGCUUUCGGC-----CACCGCCCACACAG-----ACAAACACUUUGUGUGUCUGUCUGCGAGUGGAAAG
.....(((((...((((..(((((.......((((....-))))........)))))(((-----....)))))))(((-----(((.((((.....)))).))))))...)))))... ( -30.66)
>DroEre_CAF1 25008 105 - 1
CCUAAUCCAUGUUUGUGUUGAAAGAUUACCAAACUGAGA-AGUUACACAAAGUCC-GUGC-----CACCGCCCA--CAG-----GCCAACACUUUGUGUGUCUGUCUGCGAGUGGAAAG
.....((((((((((.(((....)))...)))))..(((-((.((((((((((..-..((-----(........--..)-----))....)))))))))).)).)))....)))))... ( -27.80)
>DroYak_CAF1 26011 106 - 1
UCUAAUCCAUGUUUGUGUUGAAAGAUUACCAAACUGAGA-AGUUACACAAAGCACUUUGC-----CACCGCCCA--CAG-----GCCAACACUUUGUGUGUCUGUCUGUGAGUGGAAAG
.....((((.(((((.(((....)))...))))))).))-...........((.....))-----..((((.((--(((-----((..((((.....))))..))))))).)))).... ( -29.10)
>DroAna_CAF1 26677 115 - 1
UCGAAUUGGGGCCUGCGUUAAGAGAUUACCAAGCCGAGAAAGUUCAACAAAGCUUU--GCACUCACACUACGGA--CAGGGCUCGCUAAUACUUUGUGAGUCUGUCUGUGUCUGAGAUC
(((..((((..(((......)).)....))))..))).((((((......))))))--...((((.((.(((((--((((.(((((.........)))))))))))))))).))))... ( -35.70)
>consensus
UCUAAUCCAUGUUUGUGUUGAAAGAUUACCAAACUGAGA_AGUUACACAAAGCUUU__GC_____CACCGCCCA__CAG_____GCCAACACUUUGUGUGUCUGUCUGCGAGUGGAAAG
.....((((((((((.(((....)))...)))))..(((.((.(((((((((.......................................))))))))).)).)))....)))))... (-19.14 = -18.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:31 2006