| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,318,782 – 16,318,884 |
| Length | 102 |
| Max. P | 0.785277 |
| Location | 16,318,782 – 16,318,884 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.37 |
| Mean single sequence MFE | -27.54 |
| Consensus MFE | -9.22 |
| Energy contribution | -9.78 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16318782 102 - 20766785 AAAAUGGCCAGAAUGACAAAGGCAAAAUGCUGUAAACAAUUCUGCGGUGCUGUU-----GGAGG--AAAAGCGGGG-AAACGCGGAG-GAAAAUCGUAGCGCAGCAACAGU ......(((...........)))....((((((..((..(((((((.(.(((((-----.....--...))))).)-...)))))))-(.....)))...))))))..... ( -25.30) >DroSec_CAF1 22045 102 - 1 AAAAUGGCCAGAAUGACAAUGGCAAAAUGCUGUAAACAAUUCUGCGGUGCCGUU-----GGAGG--GAAAGCGGGG-AAACUCCGAG-GAAAAUCGGAGCGCAGCAACAGU ......((((.........))))....((((((......((((((..(.((...-----...))--.)..))))))-...((((((.-.....)))))).))))))..... ( -33.90) >DroSim_CAF1 22441 102 - 1 AAAAUGGCCAGAAUGACAAUGGCAAAAUGCUGUAAACAAUUCUGCGGUGCCGUU-----GGAGG--AAAAGCGGGG-AAACUCCGAG-GAAAAUCGGAGCGCAGCAACAGU ......((((.........))))....((((((......((((((....((...-----...))--....))))))-...((((((.-.....)))))).))))))..... ( -32.60) >DroYak_CAF1 22060 105 - 1 AAAAUGGCCAGAAUGACAAAGGCAAAAUGCUGUAAACAAUUCUGCGGUGGCGUC-----GAGGGCGAAAAGCGAGG-AAAAUCGGAGGGAAAAUCGUAGCGCAGCCUCAGA ......((.(((((......(((.....))).......)))))))(((.(((((-----((..((.....))((..-....))..........)))..)))).)))..... ( -22.92) >DroAna_CAF1 22864 94 - 1 AAAAUGGCCAAAAUGACAAAGGCAAAAUGCUGUAAACAUUUGUGUGGUGGCUUUCUCCUAGUGG--UGGGGCCAGGGAGCCUGGUAA-AAGAAUGG--------------C .....(((((..((.(((((.(((......))).....)))))))..)))))((((((((....--))))((((((...))))))..-.))))...--------------. ( -23.00) >consensus AAAAUGGCCAGAAUGACAAAGGCAAAAUGCUGUAAACAAUUCUGCGGUGCCGUU_____GGAGG__AAAAGCGGGG_AAACUCGGAG_GAAAAUCGGAGCGCAGCAACAGU ...((.((.(((((......(((.....))).......))))))).)).......................((((.....))))........................... ( -9.22 = -9.78 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:29 2006