| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,318,617 – 16,318,709 |
| Length | 92 |
| Max. P | 0.873347 |
| Location | 16,318,617 – 16,318,709 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.63 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -13.82 |
| Energy contribution | -14.38 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16318617 92 + 20766785 UCCGCAUCCACAUCUAGAUCUGCAUACAAAUUCGGUUCUAAGCCAACCGAAAGGCAAUUAAUCAAGCUGAUCUGGACUUUGCAG-----AGCAGCUA ((.(((......((((((((.((..........(((.....)))..((....))...........)).))))))))...))).)-----)....... ( -23.60) >DroSec_CAF1 21886 86 + 1 UC------UGCAUCUAGAUCUGCAUACAAAUUCGGUUCUAAGCCAACCGAAAGGCAAUUAAUCAAGCUGAUCUGGACUUUGCAG-----AGCAGCUA ((------((((((((((((.((..........(((.....)))..((....))...........)).))))))))...)))))-----)....... ( -28.60) >DroSim_CAF1 22276 92 + 1 UCCGCAUCCGCAUCUAGAUCUGCAUACAAAUUCGGUUCUAAGCCAACCGAAAGGCAAUUAAUCAAGCUGAUCUGGACUUUGCAG-----AGCAGCUA ...((.((.(((((((((((.((..........(((.....)))..((....))...........)).))))))))...))).)-----)))..... ( -27.40) >DroEre_CAF1 21078 91 + 1 UCUGUAUCUGCAUCUAGAUCUGCAUACAAAUUCGCUUCUAAGCCAACCUA-AGGCAAUUAAUCAAGUUGAUCUGGACUUUGCAG-----AGCAUCUA ..(((.((((((((((((((.((..........))......(((......-.))).............))))))))...)))))-----)))).... ( -23.40) >DroYak_CAF1 21895 92 + 1 UCUGUAUCUGCAUCUUGCUUUUCAUACAAAUAGGGCUCUAAGCCAACCUAAAGGCAAUUAAUCAAGCUGAUUCGGACUUUGCAG-----AGCAGCUA .((((.((((((..((((((((....(.....)(((.....))).....))))))))..((((.....)))).......)))))-----)))))... ( -20.70) >DroAna_CAF1 22696 95 + 1 UC-GAAUGCAAACUGCAAUCUGCAUACAAAUUCUAUCCUUACCCAGCUGCAUGGCAAUUAAUCAAGCUGAUCUAAGCUU-CCAGGUUCCAGGAGAUA ..-((((......(((.....))).....))))..((((.(((..(((....)))........(((((......)))))-...)))...)))).... ( -18.00) >consensus UC_GCAUCCGCAUCUAGAUCUGCAUACAAAUUCGGUUCUAAGCCAACCGAAAGGCAAUUAAUCAAGCUGAUCUGGACUUUGCAG_____AGCAGCUA ............((((((((.((..........(((.....)))..((....))...........)).))))))))..((((........))))... (-13.82 = -14.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:28 2006