| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,318,445 – 16,318,545 |
| Length | 100 |
| Max. P | 0.965233 |
| Location | 16,318,445 – 16,318,545 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 85.27 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -29.16 |
| Energy contribution | -28.30 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16318445 100 - 20766785 ---------------CCAUGGGGAUGGUAAGCCGUUUCAUAAGCAUUUGGCUG--CUGCCUUUGUCUUGCGUGGCGAAAUAACUUGCAUUCCAAAUGGAAAAUAAAUGUAAGGCGCC ---------------.....(..((((....))))..)....((....(((..--..)))...(((((((((.((((......)))).((((....)))).....))))))))))). ( -31.20) >DroSec_CAF1 21709 99 - 1 ---------------CCACGGGGAUGGAAAGCCGUUUCAUAAGCAA-UGGCUG--CUGCCUUUGUCUUGCGUGGCGAAAUAACUUGCAUUCCAAAUGGAAAAUAAAUGUAAGACGCC ---------------((((((..((((....))))..).(((((((-.(((..--..))).))).)))))))))........((((((((((....)))......)))))))..... ( -31.00) >DroSim_CAF1 22099 99 - 1 ---------------CCACGGGGAUGGAAAGCCGUUUCAUAAGCAA-UGGCUG--CUGCCUUUGUCUUGCGUGGCGAAAUAACUUGCAUUCCAAAUGGAAAAUAAAUGUAAGACGCC ---------------((((((..((((....))))..).(((((((-.(((..--..))).))).)))))))))........((((((((((....)))......)))))))..... ( -31.00) >DroEre_CAF1 20890 99 - 1 ---------------CCACGGGGACGGAAAGCCGUUUCGUAAGAAA-UGGCUG--CUGCCUUUGUCUUGCGUGGCGAAAUAACUUGCAUUCCAAAUGGAAAAUAAAUGUAAGACGCC ---------------....((((.(((..(((((((((....))))-))))).--))))))).(((((((((.((((......)))).((((....)))).....)))))))))... ( -38.60) >DroYak_CAF1 21700 99 - 1 ---------------CCACGGGGACGGAAAGCCGUCCCAUAAGAAA-UGGCUG--CUGCCUUUGUCUUGCGUGGCAAAAUAACUUGCAUUCCAAAUGGAAAAUAAAUGUAAGACGCC ---------------((((((((((((....))))))).(((((..-.(((..--..)))....))))))))))........((((((((((....)))......)))))))..... ( -37.60) >DroAna_CAF1 22481 116 - 1 UCUCUUGAAAGGUGUAGACGCUAUGGAAAAGGCCUUUGGUAGGCAA-AGGUUGAGUUGCCUUUGUCUUGCGUGGCGAAAUAACUUGCAUUCCGAAUGGAAAAUAAAUGUAAAACGCC ..........(((((...(((((((.((...(((...))).(((((-((((......))))))))))).))))))).......(((((((((....)))......)))))).))))) ( -33.60) >consensus _______________CCACGGGGAUGGAAAGCCGUUUCAUAAGCAA_UGGCUG__CUGCCUUUGUCUUGCGUGGCGAAAUAACUUGCAUUCCAAAUGGAAAAUAAAUGUAAGACGCC ....................(((((((....)))))))..........(((......)))...(((((((((.((((......)))).((((....)))).....)))))))))... (-29.16 = -28.30 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:27 2006