Locus 5014

Sequence ID 2R_DroMel_CAF1
Location 16,317,804 – 16,317,902
Length 98
Max. P 0.799220
window8022

overview

Window 2

Location 16,317,804 – 16,317,902
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.48
Mean single sequence MFE -38.70
Consensus MFE -36.24
Energy contribution -36.08
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.22
Structure conservation index 0.94
SVM decision value 0.61
SVM RNA-class probability 0.799220
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16317804 98 - 20766785
GGACGCCUGCAUCCUUUGGCCCCCGCGAAUCCUGCACCUUUGUCAUCGCGUCCUGCGAUGCAUAGUUGUGGGCGCUUCAGGUGAAGACUUGUGGGCGU
..(((((..((...(((.(((...(((...((..((.((.((.((((((.....)))))))).)).))..)))))....))).)))...))..))))) ( -40.50)
>DroSec_CAF1 21082 98 - 1
GGACGCCUGCAUCCUUUGGCCCCCGCGAAUCCUGCACCUUUGUCAUCGCGUCCUGCGAUGCAUAGUUGUGGGCGCUUCAGGUGAAGACUUGUGGGCGU
..(((((..((...(((.(((...(((...((..((.((.((.((((((.....)))))))).)).))..)))))....))).)))...))..))))) ( -40.50)
>DroSim_CAF1 21465 98 - 1
GGACGCCUGCAUCCUUUGGCCCCCGCGAAUCCUGCGCCUUUGUCAUCGCGUCCUGCAAUGCAUAGUUGUGGGCGCUUCAGGUGAAGACUUGUGGGCGU
..(((((..((...(((.(((..((((.....))))...........((((((.(((((.....)))))))))))....))).)))...))..))))) ( -36.20)
>DroEre_CAF1 20231 96 - 1
GGACGCCUGCAUCCUUCGGC--CCGCGAAUCCUGCGCCUUUGUCAUCGCGACCUGCGAUGCAUAGUUGUGGGCGCUUCAGGUGAAGACUCGUGGGCGU
(((.(....).)))....((--((((((.((..((((((((((((((((.....)))))).))))....))))))(((....))))).)))))))).. ( -39.70)
>DroYak_CAF1 21000 96 - 1
GGAUGCCUGGGUCCUUCGUC--CCGCGAAUCCUGCGCCUUUGUCAUCGCGACCUGCGAUGCAUAGUUGUGGGCGCUUCAGGUGAAGACUUGUGGGCGU
((((.(.((((.(....).)--))).).)))).((((((..(((...(((.((..((((.....))))..)))))(((....))))))....)))))) ( -36.60)
>consensus
GGACGCCUGCAUCCUUUGGCCCCCGCGAAUCCUGCGCCUUUGUCAUCGCGUCCUGCGAUGCAUAGUUGUGGGCGCUUCAGGUGAAGACUUGUGGGCGU
..(((((((((..(((((.(....(((...((..((.((.((.((((((.....)))))))).)).))..)))))....).)))))...))))))))) (-36.24 = -36.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:26 2006