| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,315,913 – 16,316,004 |
| Length | 91 |
| Max. P | 0.879771 |
| Location | 16,315,913 – 16,316,004 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -16.72 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16315913 91 + 20766785 AAUCAACUUUUUCGGAGCAUUCAUUUAGUAACAACAUGUUGUUACUGGAAGCUGUGCUGUAAAUAACCCAACUAUAU------------------------AGCAUCAACUUCGC----- ................((.......(((((((((....)))))))))((((.(((((((((.............)))------------------------)))).)).))))))----- ( -21.42) >DroSec_CAF1 19185 91 + 1 AAUCAACUUUUUCCGAGCAUUCAUUUAGUAACAACAUGUUGUUACUGGAAGCUGCGCUCUAAAUAACCCAACUAUAU------------------------AACAUCAACUCCGC----- ..............((((...(.(((((((((((....))))))))))).)....))))..................------------------------..............----- ( -16.00) >DroSim_CAF1 19575 91 + 1 AAUCAACUUUUUCCGAGCAUUCAUUUAGUAACAACAUGUUGUUACUGGAAGCUGCGCUCUAAAUAACCCAACUAUAU------------------------AGCAUAAACUCCGC----- ..............((((...(.(((((((((((....))))))))))).)....))))..................------------------------..............----- ( -16.00) >DroEre_CAF1 18282 91 + 1 AAUCAACUUUUUCCGAGCAUUCAUUUAGUAACAACAUGUUGUUACUGGAAGCUGUGCUCUAAAUAACCAAACUAUAU------------------------AGCACCAACUCCGC----- ..............((((((.(.(((((((((((....))))))))))).)..))))))..................------------------------..............----- ( -20.10) >DroYak_CAF1 19053 96 + 1 AAUCAACUUUUUCGGAGCAUUCAUUUAGUAACAACAUGUUGUUACUGGAAGCUGUGCUCUAAAUAACCCAACUAUAU------------------------AGCACCAACUCCGCAGUAG .....(((....(((((......(((((((((((....))))))))))).((((((..................)))------------------------))).....))))).))).. ( -22.07) >DroAna_CAF1 19938 116 + 1 AAUCAACUUUUUU-GGGCAUUCAUUUGGUAACAACAUGUUCUUACUGGAAGCUAUGCUCUAAAUAACCAAACUAUGGAGUUGGAGCUGGAGCUGUAGCUGGAGCAGCAACUUGACAG--- ..((((((.....-))((......(((....)))..((((((..(((..((((..(((((((....(((.....)))..)))))))...)))).)))..))))))))...))))...--- ( -28.60) >consensus AAUCAACUUUUUCCGAGCAUUCAUUUAGUAACAACAUGUUGUUACUGGAAGCUGUGCUCUAAAUAACCCAACUAUAU________________________AGCAUCAACUCCGC_____ ..............((((((.(.(((((((((((....))))))))))).)..))))))............................................................. (-16.72 = -16.97 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:25 2006