| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,313,551 – 16,313,649 |
| Length | 98 |
| Max. P | 0.775386 |
| Location | 16,313,551 – 16,313,649 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.49 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.34 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16313551 98 + 20766785 AUAUGCAAUAUAG--AGCAC-------AUAUGGCUAUGUGGUGGG---C---UUUCCAUAUCAGCCUGCACUAGACAGCACGUGUCAAACCAAGAACAAAAAAAAAAAAACA-A ...(((....(((--.(((.-------....((((((((((....---.---...)))))).))))))).)))....)))................................-. ( -19.00) >DroSec_CAF1 16899 96 + 1 AUAUGCAAUAUGG--AGCACAUAUCACAUAUGGCUAUGUG-UGGG---C---UUGCCAUAUGAGCCUGCACUAGACAGCACGUGCCAAACCAAGAA--------AAAAAACA-A .((((..(((((.--....)))))..))))((((...(((-..((---(---((.......)))))..)))...((.....)))))).........--------........-. ( -25.40) >DroSim_CAF1 17247 95 + 1 AUAUGCAAUAUGG--AGCACAUAUCACAUAUGGCUAUGUG-UGGG---C---UUUCCAUAUGAGCCUGCACUAGACAGCACGUGCCAAACCAAGAA--------A-AAAACA-A .((((..(((((.--....)))))..))))((((...(((-..((---(---((.......)))))..)))...((.....)))))).........--------.-......-. ( -25.50) >DroEre_CAF1 15951 91 + 1 AUAUGCAAUAUAG--AGCAC-------AUAUGGCGGUGUG-UGGUGUGUGGUGCUCCAUAUGAGCCUGCACUAGACAGCACGUGCCAAACCAAGAA--------AAAA-----U ...(((.......--.))).-------...(((.((..((-((.(((.((((((.............)))))).))).))))..))...)))....--------....-----. ( -29.22) >DroYak_CAF1 16726 94 + 1 AUAUGCAAUAUAGAGAGCAC-------AUAUGCCGAUGUG-UGGUGUUC---GUUCCAUAUGAGCCUGCACUAGACAGCACGUGCCAAACCAAGAA--------CAAA-CCAAG ..............(.((((-------...(((...(((.-((((((..---((((.....))))..)))))).)))))).)))))..........--------....-..... ( -21.40) >consensus AUAUGCAAUAUAG__AGCAC_______AUAUGGCUAUGUG_UGGG___C___UUUCCAUAUGAGCCUGCACUAGACAGCACGUGCCAAACCAAGAA________AAAAAACA_A ................((((...........(((...(((.(((...........))))))..)))(((........))).))))............................. (-10.30 = -10.34 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:24 2006