Locus 5011

Sequence ID 2R_DroMel_CAF1
Location 16,312,283 – 16,312,376
Length 93
Max. P 0.883001
window8019

overview

Window 9

Location 16,312,283 – 16,312,376
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 90.09
Mean single sequence MFE -29.52
Consensus MFE -23.78
Energy contribution -24.90
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.92
SVM RNA-class probability 0.883001
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16312283 93 + 20766785
AUGCAAAAUAAUUGGUCUGAACCAAUGGCGAUGCACUCGGCGUUAAGCCGCCGGA-AAUUCGGUGGUUUGAACAGGUCCGAUUUCCGGA-AUUCC
.((((.....((((((....)))))).....))))..((((.....))))(((((-(((.(((..((....))....))))))))))).-..... ( -31.10)
>DroSec_CAF1 15635 93 + 1
AUGCAAAAUAAUUGGUCUGAACCAAUGGCGAUGCACUCGGGGUUAAGCCGCCGGA-AAUUCGGUGGUUUGAACAGGUCCGAUUUCCGGA-AUUCC
.((((.....((((((....)))))).....))))...((((((((((((((((.-...)))))))))))).....((((.....))))-.)))) ( -31.10)
>DroSim_CAF1 15968 93 + 1
AUGCAAAAUAAUUGGUCUGAACCAAUGUCGAUGCACUCGGGGUUUAGCCGCCGGA-AAUUCGGUGGUUUGAACAGGUCCGAUUUCCGGA-AUUCC
.((((.....((((((....)))))).....))))...((((((((((((((((.-...))))))).))))))...((((.....))))-..))) ( -30.30)
>DroEre_CAF1 14726 93 + 1
AUGCAAAAUAAUUGGUCUGAACCAAUGGCUAUGCACUCGGGUUUAAGCCACCGGC-AAUUCGGUGGUCUGAACAGGUUCUAUGCCCAGA-AUUCU
.((((.....((((((....)))))).....)))).((..(((((..(((((((.-...)))))))..))))).(((.....)))..))-..... ( -29.10)
>DroYak_CAF1 15532 95 + 1
AUGCAAAAUAAUUGGUCUAAACCAAUGGCGAUGCACUCGGGGUUAAGCCGCCGGAAAAUUCGCAGCUUUGAACAGGUCCGAUGCCCCGAAAUGCU
.((((.....((((((....)))))).....)))).(((((((........((((...((((......))))....))))..)))))))...... ( -26.00)
>consensus
AUGCAAAAUAAUUGGUCUGAACCAAUGGCGAUGCACUCGGGGUUAAGCCGCCGGA_AAUUCGGUGGUUUGAACAGGUCCGAUUUCCGGA_AUUCC
.((((.....((((((....)))))).....)))).(((((.((((((((((((.....)))))))))))).....))))).............. (-23.78 = -24.90 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:23 2006