Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,741,096 – 2,741,189 |
Length | 93 |
Max. P | 0.784003 |
Location | 2,741,096 – 2,741,189 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -19.26 |
Energy contribution | -19.73 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.13 |
Mean z-score | -1.71 |
Structure conservation index | 0.60 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2741096 93 + 20766785 --------------UUUCAGGUGGCG-UGGC--------AAAGCGCUAAACGCUGUUUGCCAUUCGGA--UAUCGAAAGUUAUAAAGCAUGAAAUCAGUGCCAGCCACCGCCAUGCGA --------------.....(((((((-((((--------((((((.....))))..)))))))....(--((.(....).)))...((((.......))))..))))))......... ( -30.20) >DroPse_CAF1 24185 116 + 1 GCUCCGUUCCUUUUUGGCAGGUGGCACUGGCACUACGCUAAAGCGCUAAACGUUGUUUGCCAUUCGGA--UAUCGGGAGUUAUAAAGCAUGAAAUCAGUGCCAGCCACCGCCAGGAGA .((((.........((((.((((((..(((((((.(((....))).....(((.((((....(((.(.--...).)))......))))))).....))))))))))))))))))))). ( -40.80) >DroGri_CAF1 27785 85 + 1 -----------------------GGC-UGGC--------GAAGCGCUAAACGUUGUUUGCUAUUCGCAUCUAUCGAAGGUUAUAAAGCAUAAAAUCAGUGCCAGACGGCGGCAGCAG- -----------------------.((-((((--------(...)))....(((((((((...((((.......)))).........((((.......))))))))))))).))))..- ( -21.80) >DroEre_CAF1 16416 93 + 1 --------------UUUCAGGUGGCG-UGGC--------AAAGCGCUAAACGCUGUUUGCCAUUCGGA--UAUCGAAAGUUAUAAAGCAUGAAAUCAGUGCCAGCCACCGCCAUGCGA --------------.....(((((((-((((--------((((((.....))))..)))))))....(--((.(....).)))...((((.......))))..))))))......... ( -30.20) >DroYak_CAF1 26014 93 + 1 --------------UUUCAGGUGGCG-UGGC--------AAAGCGCUAAACGCUGUUUGCCAUUCGGA--UAUCGAAAGUUAUAAAGCAUGAAAUCAGUGCCAGCCACCGCCAUGCGA --------------.....(((((((-((((--------((((((.....))))..)))))))....(--((.(....).)))...((((.......))))..))))))......... ( -30.20) >DroPer_CAF1 24569 116 + 1 GCUCCGUUCCUUUUUGGCAGGUGGCACUGGCACUACGCUAAAGCGCUAAACGUUGUUUGCCAUUCGGA--UAUCGGGAGUUAUAAAGCAUGAAAUCAGUGCCAGCCACCGCCAGGAGA .((((.........((((.((((((..(((((((.(((....))).....(((.((((....(((.(.--...).)))......))))))).....))))))))))))))))))))). ( -40.80) >consensus ______________UUUCAGGUGGCG_UGGC________AAAGCGCUAAACGCUGUUUGCCAUUCGGA__UAUCGAAAGUUAUAAAGCAUGAAAUCAGUGCCAGCCACCGCCAGGAGA ...................((((((..((((..........((((.....))))((((....(((((.....))))).......))))...........))))))))))......... (-19.26 = -19.73 + 0.47)
Location | 2,741,096 – 2,741,189 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -16.60 |
Energy contribution | -18.13 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.74 |
Structure conservation index | 0.53 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2741096 93 - 20766785 UCGCAUGGCGGUGGCUGGCACUGAUUUCAUGCUUUAUAACUUUCGAUA--UCCGAAUGGCAAACAGCGUUUAGCGCUUU--------GCCA-CGCCACCUGAAA-------------- (((..(((((.((((.(((.((((....(((((......(.((((...--..)))).)......))))))))).)))..--------))))-)))))..)))..-------------- ( -30.50) >DroPse_CAF1 24185 116 - 1 UCUCCUGGCGGUGGCUGGCACUGAUUUCAUGCUUUAUAACUCCCGAUA--UCCGAAUGGCAAACAACGUUUAGCGCUUUAGCGUAGUGCCAGUGCCACCUGCCAAAAAGGAACGGAGC .(((((((((((((((((((((..........................--...(((((........))))).((((....)))))))))))..)))))).)))).........)))). ( -39.60) >DroGri_CAF1 27785 85 - 1 -CUGCUGCCGCCGUCUGGCACUGAUUUUAUGCUUUAUAACCUUCGAUAGAUGCGAAUAGCAAACAACGUUUAGCGCUUC--------GCCA-GCC----------------------- -..((((..(((....)))................................(((((..((((((...)))).))..)))--------))))-)).----------------------- ( -16.90) >DroEre_CAF1 16416 93 - 1 UCGCAUGGCGGUGGCUGGCACUGAUUUCAUGCUUUAUAACUUUCGAUA--UCCGAAUGGCAAACAGCGUUUAGCGCUUU--------GCCA-CGCCACCUGAAA-------------- (((..(((((.((((.(((.((((....(((((......(.((((...--..)))).)......))))))))).)))..--------))))-)))))..)))..-------------- ( -30.50) >DroYak_CAF1 26014 93 - 1 UCGCAUGGCGGUGGCUGGCACUGAUUUCAUGCUUUAUAACUUUCGAUA--UCCGAAUGGCAAACAGCGUUUAGCGCUUU--------GCCA-CGCCACCUGAAA-------------- (((..(((((.((((.(((.((((....(((((......(.((((...--..)))).)......))))))))).)))..--------))))-)))))..)))..-------------- ( -30.50) >DroPer_CAF1 24569 116 - 1 UCUCCUGGCGGUGGCUGGCACUGAUUUCAUGCUUUAUAACUCCCGAUA--UCCGAAUGGCAAACAACGUUUAGCGCUUUAGCGUAGUGCCAGUGCCACCUGCCAAAAAGGAACGGAGC .(((((((((((((((((((((..........................--...(((((........))))).((((....)))))))))))..)))))).)))).........)))). ( -39.60) >consensus UCGCAUGGCGGUGGCUGGCACUGAUUUCAUGCUUUAUAACUUUCGAUA__UCCGAAUGGCAAACAACGUUUAGCGCUUU________GCCA_CGCCACCUGAAA______________ .........((((((((((..........((((........((((.......)))).)))).....((.....))............))))..))))))................... (-16.60 = -18.13 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:18 2006