Locus 5009

Sequence ID 2R_DroMel_CAF1
Location 16,311,345 – 16,311,446
Length 101
Max. P 0.960339
window8017

overview

Window 7

Location 16,311,345 – 16,311,446
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 91.78
Mean single sequence MFE -24.38
Consensus MFE -20.12
Energy contribution -21.00
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.95
Structure conservation index 0.83
SVM decision value 1.51
SVM RNA-class probability 0.960339
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16311345 101 + 20766785
GUAUUCCAAAUUAUUUAUGUAUGUGCUGCUUUUCUGCUGUAAUUACAUUGUAAAUUUAACGUUCCGAAAACCAAAGUUUUGUGGAGAGGGUACGAGUACAU
((((((....((((..(((((..(((.((......)).)))..))))).))))......(.((((((((((....))))).))))).).....)))))).. ( -21.40)
>DroSec_CAF1 14725 101 + 1
GUAUUCAAAAUUAUUUAUGUAUGUGCUGCUUUUCUGCUGUAAUUACAUUGUAAAUUUAACGUUCCGAAAACCAAAGUUUUGUGGAGAGAGUACGAGUACAU
((((((....((((..(((((..(((.((......)).)))..))))).)))).....((.((((((((((....))))).)))))...))..)))))).. ( -23.10)
>DroSim_CAF1 15051 101 + 1
GUAUUCGGUAUUAUUUAUGUAUGUGCAGCUUUUCUGCUGUAAUUACAUUGUAAAUUUAACGUUCCGAAAAACAACGUUUUGUGGAGAGGGCACGAGUACAU
(((((((((.((((..(((((..((((((......))))))..))))).))))......(.(((((.(((((...))))).))))).).)).))))))).. ( -29.60)
>DroEre_CAF1 13816 101 + 1
GUAUUCGAAAUUAUUUAUGUAUGUGCAGCUUUUGUGCUGUAAUUACAUUGUAAAUUAAACGUUCCGAAAACCAAAGUUUUGUGCAGAUGGUGCAAGUACAU
((.((((.((((((..(((((..((((((......))))))..))))).)))........))).)))).))....((((((..(.....)..)))).)).. ( -20.60)
>DroYak_CAF1 14608 101 + 1
GUAUUCGAAAUUAUUUAUGUAUGUGCAGCUUUUGUGCUGUAAUUGCAUUGUAAAUGUAACGUUUCGAAAACCAAAGUUUUGUGCAAAUGGUACGAGUACAU
((((((....((((..(((((..((((((......))))))..))))).))))..(((.((((((((((((....))))).)).))))).))))))))).. ( -27.20)
>consensus
GUAUUCGAAAUUAUUUAUGUAUGUGCAGCUUUUCUGCUGUAAUUACAUUGUAAAUUUAACGUUCCGAAAACCAAAGUUUUGUGGAGAGGGUACGAGUACAU
((((((....((((..(((((..((((((......))))))..))))).))))........((((((((((....))))).))))).......)))))).. (-20.12 = -21.00 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:21 2006