| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,308,089 – 16,308,185 |
| Length | 96 |
| Max. P | 0.848114 |
| Location | 16,308,089 – 16,308,185 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.41 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -3.40 |
| Energy contribution | -3.60 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16308089 96 + 20766785 UAAGU-UUGGCUCACACACACAGUUACUG-----CGAAUUGUAAAUAACAAACAUCUCGUGUG-CCCGGCAAUUAUUUGCACACAAAAAAAAAA---ACAUUCAAA ...((-(((((.(((...(.(((...)))-----.)..((((.....)))).......))).)-))..((((....))))............))---))....... ( -16.10) >DroSec_CAF1 11507 90 + 1 UAAGU-UUGGCUUACACACACAGCUACAG-----UGAAUUGUAAAUAACAAACAUCUCGUGUGGCCCGGCAAUUAUUUGCACA------AA-AA---ACAUUCAAA ...((-((((((.((((.(((.......)-----))..((((.....)))).......))))))))..((((....))))...------..-))---))....... ( -18.30) >DroEre_CAF1 10591 89 + 1 UAAGU-UUGGCUCACA--CACAGAUAUUG-----UGAAUUGUAAAUAACAAACAUCUCGUGUGGCACGGCAAUUAUUUGCACA------AAAAA---ACAUUCAAA ...((-((.((.((((--(..((((.(((-----(............))))..)))).)))))))...((((....))))...------...))---))....... ( -17.40) >DroYak_CAF1 11314 92 + 1 UAAGU-UUGGCUCACA--CACAGAUAUUG-----UGAAUUGUAAAUAACAAACAUCUCGUGUGGCACGGCAAUUAUUUGCCCA------AAAAAAAAGCAUUUAAA ...((-((.((.((((--(..((((.(((-----(............))))..)))).)))))))..(((((....)))))..------......))))....... ( -20.10) >DroAna_CAF1 11736 93 + 1 UAGAUCCUGGCUCGCAAA--CACAUAGAGAAAGAGGAACUGCCUGAAACAAACAACUCAAGAGUGGCAGCAAUUAUUUGCCAA------AAAAA---AAAU--AUG (((.((((..(((.....--......)))....)))).)))......................((((((.......)))))).------.....---....--... ( -13.60) >consensus UAAGU_UUGGCUCACA_ACACAGAUACUG_____UGAAUUGUAAAUAACAAACAUCUCGUGUGGCACGGCAAUUAUUUGCACA______AAAAA___ACAUUCAAA ...................................((..(((.........)))..))..........((((....)))).......................... ( -3.40 = -3.60 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:20 2006