Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,305,566 – 16,305,661 |
Length | 95 |
Max. P | 0.948856 |
Location | 16,305,566 – 16,305,661 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.61 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -19.99 |
Energy contribution | -20.05 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.29 |
Structure conservation index | 0.95 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.948856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16305566 95 + 20766785 GAAAAUUAAUAUUGAGUAACUACGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG .........((((((((.....((.((.......)))).)))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -19.10) >DroSec_CAF1 9009 95 + 1 GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG .........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60) >DroSim_CAF1 9403 95 + 1 GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG .........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60) >DroEre_CAF1 8011 95 + 1 GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUUUGCCAAUGAGAUUGUAAUUAGCG .........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60) >DroYak_CAF1 8722 95 + 1 GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUUUGCCAAUGAGAUUGUAAUUAGCG .........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). ( -21.60) >DroAna_CAF1 9314 95 + 1 GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACGCGAACUCGAUAAACAGGCUAAUUAGUUUCUGCUCUUUGGCAAUGAGAUUGUAAUUAGUG .........((((((((....(((.(((...)))..))))))))))).....(((((((((((((((((....))))..)))))..)))))))). ( -21.20) >consensus GAAAAUUAAUAUUGAGUAACUUCGAUGGCUGCCACACGAACUCGAUAAACAAGCUAAUUAGUUUCUGCUCUCUGCCAAUGAGAUUGUAAUUAGCG .........((((((((....(((.((.......))))))))))))).....(((((((((((((.((.....))....)))))..)))))))). (-19.99 = -20.05 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:19 2006