Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,281,101 – 16,281,206 |
Length | 105 |
Max. P | 0.671027 |
Location | 16,281,101 – 16,281,206 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 76.45 |
Mean single sequence MFE | -25.71 |
Consensus MFE | -13.19 |
Energy contribution | -14.31 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.38 |
Structure conservation index | 0.51 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16281101 105 + 20766785 CAGCUGUGGCAGCAAAUUGAUAAAAACACAGGCAGUGGCAGCGGCAGUGGCAGUUGCAACGGCAGCUACA------GCUGCAACCAUAACGACAACGGCGACCAAACAAUA ((((((((((.((.............(((.....)))(((((.((....)).)))))....)).))))))------))))............................... ( -31.40) >DroSec_CAF1 56256 87 + 1 CAGCUGUGGCAGCAAAUUGAUAAAAACCCAGGC------------------AGUUGCAACGGCAACUGCA------GCUGCAACCAUAACGACAACGGCGACCAAACAAUA ..(((((.(((((...(((.........)))((------------------((((((....)))))))).------))))).............)))))............ ( -27.04) >DroYak_CAF1 70145 93 + 1 CAGCUGUGGCAGCAAAUUGAUAAAAACACAGG------------------CAGUGGCAGUUGCAACUUCUGCAGCAACAUCAACCAUAACGACAACGGCGACCAAACAAUA ......(((..((...(((((.....(((...------------------..)))...((((((.....))))))...)))))......((....))))..)))....... ( -18.70) >consensus CAGCUGUGGCAGCAAAUUGAUAAAAACACAGGC_________________CAGUUGCAACGGCAACUACA______GCUGCAACCAUAACGACAACGGCGACCAAACAAUA ..(((((.(((((...(((.........)))....................((((((....)))))).........))))).............)))))............ (-13.19 = -14.31 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:09 2006