Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,738,202 – 2,738,295 |
Length | 93 |
Max. P | 0.799051 |
Location | 2,738,202 – 2,738,295 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -18.28 |
Energy contribution | -20.08 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.16 |
Mean z-score | -1.71 |
Structure conservation index | 0.63 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2738202 93 - 20766785 ---------GAGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUUUGGACGUGACCGAAGGAU ---------..........((((((.((((((((((....)))))))).)).....(((((....((....))...)))))....))))))........... ( -23.40) >DroSec_CAF1 22372 93 - 1 ---------GGGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGGUGGAU ---------.....(((((((((((((((...((((((((.....))))))))...(((((....((....))...)))))))))))))))....))))).. ( -35.40) >DroEre_CAF1 13598 90 - 1 ---------GGCAGCCACUCCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGGCG--- ---------....(((..(((((((((((...((((((((.....))))))))...(((((....((....))...)))))))))))))).))..))).--- ( -34.90) >DroWil_CAF1 7816 86 - 1 AGGUCCACACGUGGCC--------ACCGAAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCUUUUAAUGUCUGCAAGAGGGGGUGCAGGAUCUCAC-------- .((.(((....)))))--------...(((((((((....)))))))(((..(((((((((((..((....)).)))))))))))..)))))..-------- ( -23.90) >DroYak_CAF1 23108 93 - 1 ---------GCGAGCCACUGCCUCCCCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGCCGCCGAAUGGGGAGUGUGGACGUGACCGGAGGAU ---------(((..((((...(((((((((((((((....)))))))).....((((.......)))).......))))))).)))).)))........... ( -26.90) >consensus _________GGGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGGAGGAU ...................((((((((((...((((((((.....))))))))...(((((....((....))...)))))))))))))))........... (-18.28 = -20.08 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:16 2006