| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 835,317 – 835,432 |
| Length | 115 |
| Max. P | 0.986762 |
| Location | 835,317 – 835,432 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -25.18 |
| Energy contribution | -24.85 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.986762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 835317 115 - 20766785 AAUUCCAUGAACAUACCGUGAGGCUAACGUCUCUCCUGGCAAAGUUACGACAGGGGUACCCGUCCACAAAACGUCCAUAGAUGUUGUAUGCCCAUUGCAUAAAGGAGUAUCAAGA .......(((((.((((..(((((....))))).((((............))))))))....(((....((((((....)))))).(((((.....)))))..))))).)))... ( -29.30) >DroVir_CAF1 11230 109 - 1 AA------AUAUUUACCUGGAAGCUAAUGUUUCUCCGGGUAAUGUAAUUACUGGAGUUCCGGUCCAUAAGACGUCCAUUGAUGUGGUGUGUCCAUUGCAUAAUGGAGUGUCCAGA ..------....((((((((((((....)))..))))))))).......(((((....)))))......(((((((((((.((..(((....)))..))))))))).)))).... ( -36.10) >DroGri_CAF1 7629 106 - 1 ---------AAUAUACCUGGAAGCUAAUGUUUCUCCGGGCAGGGUAACAACUGGAGUUCCCGUCCACAAGACGUCCAUUGAUGUCGUGUGACCAUUACACAGUGGAGUGUCCAGG ---------......(((((((((....))))))..((((((((.(((.......)))))).(((((..((((((....))))))((((((...)))))).))))).)))))))) ( -38.90) >DroEre_CAF1 16247 101 - 1 --------------ACCUAGAGGCUAACGUCUCUCCUGGCAACGUUACGACAGGAGUACCCGUCCAUAAAACGUCCAUGGACGUGGUGUGUCCAUUACAUAAUGGGGUAUCAAGA --------------.....(((((....)))))(((((............)))))((((((...((((..(((((....)))))..))))..((((....))))))))))..... ( -34.20) >DroWil_CAF1 5756 101 - 1 --------------ACCUUGAAGCUAAGGUCUCGCCCGGUAGGGUAACAACCGGAGUGCCAGUCCACAAAACGUCCAUAGAUGUUGUAUGCCCAUUACAUAAUGGAGUGUCAAGA --------------..(((((.(((..((.((((((((((.(.....).))))).)))..)).))....((((((....))))))......(((((....)))))))).))))). ( -30.30) >DroMoj_CAF1 7639 109 - 1 AA------CUAUUUACCUGGAAGCUAACGUUUCUCCGGGCAAUGUGACGACUGGAGUUCCUGUCCAUAAGACAUCCAUGGAUGUUGUGUGACCAUUGCAUAGUGGGGUAUCUAGG ..------(((..(((((((((((....))))))....((((((.(..(((.((....)).)))((((.((((((....)))))).)))).)))))))......)))))..))). ( -38.30) >consensus __________AU_UACCUGGAAGCUAACGUCUCUCCGGGCAAGGUAACGACUGGAGUUCCCGUCCACAAAACGUCCAUAGAUGUUGUGUGACCAUUACAUAAUGGAGUAUCAAGA ................(((((.(((.......((((((............))))))........((((.((((((....)))))).)))).(((((....)))))))).))))). (-25.18 = -24.85 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:10 2006