| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,279,532 – 16,279,631 |
| Length | 99 |
| Max. P | 0.723003 |
| Location | 16,279,532 – 16,279,631 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -20.61 |
| Energy contribution | -20.67 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.723003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16279532 99 - 20766785 GAACA---U----ACA----------UACAUAUUUAUGUAUAAUAUUUAGUGGCGGCUGGUGCAAAGUU-UUG-GGCGUACGCGGCGUAUGCGUGUUGCUCAAUUGCCGCUGGCAGGA ....(---(----(((----------((......))))))).....(((((((((((....))......-(((-((((.(((((.......)))))))))))).)))))))))..... ( -30.80) >DroSec_CAF1 54693 99 - 1 GAACA---U----ACA----------UACAUAUUUAUGUAUAAUAUUUAGUGGCAGCUGGUGCAAAGUU-UCG-GUCGUACGCGGCGUAUGCGUGUUGCUCAAUUGCCGCUGGCAGAA ....(---(----(((----------((......))))))).....((((((((((.(((.((((.((.-...-((((....))))....))...))))))).))))))))))..... ( -30.10) >DroEre_CAF1 59705 107 - 1 GUACG---U----ACAUACAUA--CGUGCAUAUUUAUGUAUAAUAUUUAGUGGCAGCUGGUGCAAAGUU-UUG-GGCGUACGCGGCGUAUGCGUGUUGCUCAAUUGCCGCUGGCAGAA (((((---(----(......))--))))).................(((((((((((....))......-(((-((((.(((((.......)))))))))))).)))))))))..... ( -35.30) >DroWil_CAF1 107865 91 - 1 --------------------------CAGAUAGAUAUACAUAAUAUUUAGUGGCAGCUGUUGCAAACUUUUUG-GGCGUACGCUGCGUAUGCGUGUUACUUCAUUGCCGCCGGCUAAC --------------------------....(((((((.....)))))))(((((((..((.(((..((....)-)(((((((...))))))).))).))....)))))))........ ( -21.70) >DroYak_CAF1 68420 117 - 1 AUACAACAUACACACAUGCAUACUCGUACAUAUUUAUGUAUAAUAUUUAGUGGCAGCUGGUGCAAAGUU-UUGGGGCGUACGCGGCGUAUGCGUGUUGCUCAAUUGCCGCUGGCAGAA ................(((......((((((....))))))......((((((((((....))......-...(((((.(((((.......))))))))))...)))))))))))... ( -32.20) >DroAna_CAF1 33393 98 - 1 -UUCG---U----ACA----------ACCAUAUUUAUGUUUAAUAUUUAGUGGCAGCUGCUGCAAAGUU-UUG-GGCAUACGCGGCGUAUGCGUUUUGCCCAAUUGCCGCUGGCAGAC -....---.----...----------....................(((((((((((....))......-(((-((((.(((((.....)))))..))))))).)))))))))..... ( -31.50) >consensus GUACA___U____ACA__________UACAUAUUUAUGUAUAAUAUUUAGUGGCAGCUGGUGCAAAGUU_UUG_GGCGUACGCGGCGUAUGCGUGUUGCUCAAUUGCCGCUGGCAGAA ..............................................(((((((((((....))............(((((((...)))))))............)))))))))..... (-20.61 = -20.67 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:08 2006