Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,265,046 – 16,265,143 |
Length | 97 |
Max. P | 0.527348 |
Location | 16,265,046 – 16,265,143 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.65 |
Mean single sequence MFE | -23.72 |
Consensus MFE | -11.10 |
Energy contribution | -12.16 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.21 |
Mean z-score | -2.97 |
Structure conservation index | 0.47 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16265046 97 - 20766785 CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC-------AUAAUGUAUUUGCUAGGGU-UUCAUUAUUGUUUU-UU--GUUU ((((((..((((((.((((((((.((((....(((((....))).)).)))).)))))-------)))))))))..))))))..-..............-..--.... ( -27.00) >DroSec_CAF1 40208 98 - 1 CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCCGGGACAUACAAUUGUAC-------AUAAUGUAUUUGCUAGAGU-UUCGUUAUUGUUUUUUU--UGUU .(((((..((((((.((((((((.((((...(((......))).....)))).)))))-------)))))))))..)))))...-.................--.... ( -20.90) >DroSim_CAF1 40703 97 - 1 CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCCGUGACAUACAAUUGUAC-------AUAAUGUAUUUGCUAGGGU-UUCGUUAUUGUUUU-UU--UGUU ((((((..((((((.((((((((.((((....(((((....))).)).)))).)))))-------)))))))))..))))))..-..............-..--.... ( -26.40) >DroEre_CAF1 45476 97 - 1 CCUGGCUUAUAUAUGUAUGUAUACUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC-------AUAACGUAUUUGCUAGGGU-UUCGUUAUUGUUUUAAUGAU--- ((((((....(((((((((((((.((((....(((((....))).)).)))).)))))-------)).))))))..))))))..-.((((((......)))))).--- ( -30.20) >DroYak_CAF1 53595 100 - 1 CCUGGCUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC-------AUAAUGUUUUUGCUAGGGU-UUCGUUAUUGUUUUUAUUAUGUU ((((((....((((.((((((((.((((....(((((....))).)).)))).)))))-------)))))))....))))))..-....................... ( -25.00) >DroAna_CAF1 19231 100 - 1 CCUGGUUUAUAUAUGAAU--ACACUUUUAGGCGGCUAUUCUGUGACAUUCACUCAUACGUAUUACGUAUUGUAUUCGAUAAAGUUUUCGUUAUUGUUUU-UU--C--- .............(((((--(((..................(((.....)))..(((((.....)))))))))))))......................-..--.--- ( -12.80) >consensus CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC_______AUAAUGUAUUUGCUAGGGU_UUCGUUAUUGUUUU_UU__UGUU ((((((..((((((((((((.(((.....(((......)))))))))))))..................)))))..)))))).......................... (-11.10 = -12.16 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:02 2006