| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,253,924 – 16,254,018 |
| Length | 94 |
| Max. P | 0.719138 |
| Location | 16,253,924 – 16,254,018 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -13.18 |
| Energy contribution | -12.82 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.719138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16253924 94 - 20766785 -----U------GGGG-----------UCUGGGAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAU----AUGGCCAUAAACAUUUGGAGCGAUGAACUUU -----.------(..(-----------((.(..(((((......)))))..)..)))..)((((((...))))))....(((((.----(((........))).))).)).......... ( -26.00) >DroVir_CAF1 85613 107 - 1 -----U------GGGGCG--AAGACUGGCAUGAAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAUGCCCAUAAACAUAAACAUUUGGAGCAAUGAACUUU -----.------.(((((--((((...((((....)))).)))))...............((((((...))))))....)))).((((((..............))).)))......... ( -28.94) >DroGri_CAF1 14129 109 - 1 -----U------AAGGAGAAAAAGCAGGCAUGAAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAUGCCCAUAAACAUAAACAUUUGGAGCAAUGAACUUU -----.------.((((((((((....((((....)))).......))))))).......((((((...)))))).....))).((((((..............))).)))......... ( -25.44) >DroWil_CAF1 77868 92 - 1 -------------GAA-----------ACAUGAAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAU----AUGCCCAUAAACAUUUGGGGCAAUGAACUUU -------------(((-----------(.(((((((....))))))).)))).....(((((((((...))))))..........----.(((((.(((....))))))))..))).... ( -23.10) >DroMoj_CAF1 100829 100 - 1 -----A------GAGGCU-------UUG--CGAAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAGGCCCAUAAACAUAAACAUUUGGAGCAAUGAACUUU -----.------.(((((-------(..--.(((((((......))))))).........((((((...))))))..))))))..(((((..............))).)).......... ( -22.24) >DroAna_CAF1 12635 103 - 1 GAGAGCAGCAGAAGGA-----------GCU--GAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAU----AUGCCCAUAAACAUUUAGAGCGAUGAACUUU ....(((.(((.....-----------.))--)...)))...((((((............((((((...))))))....(((((.----(((........))).))).)))))))).... ( -23.20) >consensus _____U______GGGG___________GCAUGAAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAU____AUAAACAUAAACAUUUGGAGCAAUGAACUUU ..........................................((((((............((((((...))))))....(((((....................))).)))))))).... (-13.18 = -12.82 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:55 2006