Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,253,755 – 16,253,850 |
Length | 95 |
Max. P | 0.765132 |
Location | 16,253,755 – 16,253,850 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.85 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -14.13 |
Energy contribution | -13.55 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.17 |
Mean z-score | -2.45 |
Structure conservation index | 0.54 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16253755 95 - 20766785 GGAAUCCUUCUGCU------UCACUCGUUUGCGGAGCC-AAGCUGUAAAAAUUUAUUACCCUUCGCCAGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU ........(((((.------..........)))))((.-(((..((((.......)))).))).))..((((((.(((((((......))))))).)))))) ( -21.20) >DroPse_CAF1 46720 95 - 1 GGUAUCCUUACUC-----UCAAUGCUGCCUGCUGU-AA-GGGCUGUAAAAAUUUAUUACCCUUCAGCAAUGUUGAUGCAUGUUUGUACACAUGUAACAACAU ((((.(.((....-----..)).).))))(((((.-((-(((..((((....))))..))))))))))((((((.(((((((......))))))).)))))) ( -30.00) >DroEre_CAF1 38992 94 - 1 GGAAUCCUUCUGC-------UCUCUCGUUUGCGGAGCA-GAGCUGUAAAAAUUUAUUACCCUUCGCCUGUGUUGAUGCAUGUUUGCACACAUGUAGCAACUU ((.....((((((-------((((......).))))))-)))..((((.......)))))).........((((.(((((((......))))))).)))).. ( -23.50) >DroYak_CAF1 46981 101 - 1 GGAAUCCUUCUGCUGCUCUCUCUCUCGUUUGCGGAGCA-GAGCUGUAAAAAUUUAUUACCCUUUGCCUGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU ..........(((.(((((..(((.((....))))).)-)))).))).....................((((((.(((((((......))))))).)))))) ( -26.50) >DroAna_CAF1 12460 90 - 1 GGUAUCCUUAUGC-----------UCGU-UGUGGGGCUGGGGCUGUAAAAAUUUAUUACCCUUCGCCUGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU (((((....))))-----------)...-....((((.((((..((((....))))..))))..))))((((((.(((((((......))))))).)))))) ( -26.60) >DroPer_CAF1 46653 95 - 1 GGUAUCCUUACUC-----UCAAUGCUGCCUGCUGU-AA-GGGCUGUAAAAAUUUAUUACCCUUCAGCAAUGUUGAUGCAUGUUUGUACACAUGUAACAACAU ((((.(.((....-----..)).).))))(((((.-((-(((..((((....))))..))))))))))((((((.(((((((......))))))).)))))) ( -30.00) >consensus GGAAUCCUUAUGC_______UCUCUCGUUUGCGGAGCA_GAGCUGUAAAAAUUUAUUACCCUUCGCCAGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU ((........................((((.........)))).((((.......)))))).......((((((.(((((((......))))))).)))))) (-14.13 = -13.55 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:54 2006